BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZB03RM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1354 587 e-167
>3x_Contig1354
Length = 7778
Score = 587 bits (296), Expect = e-167
Identities = 345/358 (96%), Gaps = 3/358 (0%)
Strand = Plus / Plus
Query: 42 cttgcttgagtttttccgaacaatgg-ttgtaaaagcagagaagttggaaacacagtcga 100
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 6695 cttgcttgagtttttccgaacaaagggttgtaaaagcagagaagttggaaacacagtcga 6754
Query: 101 agatgtagggaaacagcgtaacatcattggtcgaagaccggttcctgtgggaacatggtg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6755 agatgtagggaaacagcgtaacatcattggtcgaagaccggttcctgtgggaacatggtg 6814
Query: 161 cggctgtgtgtttgccacaaaaacgaaaaaagaaccaaaaaaaaacgttaaacgttatan 220
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 6815 cggctgcgtgtttgccacaaaaacgaaaaaagaaccaaaaaaaaacgttaaacgcta-at 6873
Query: 221 atcgttcgtttggtaaaaaaaaggaatcgccgaatcttgaattccaggatttctatgaaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874 atcgttcgtttggtaaaaaaaaggaatcgccgaatcttgaattccaggatttctatgaaa 6933
Query: 281 tcctgnaattctttactgctttcatactcgaatttcgtctggttcgttgtttttgatttt 340
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6934 tcctggaattctttactgctttcatactcgaatttcgtctggttcgttgtttttgatttt 6993
Query: 341 tcattattattcata-aaattcagtatagtgcaaactgatttcaccttgtaaagaaag 397
||||||||||||||| | ||||||||||||||||||||| |||| | |||| ||||||
Sbjct: 6994 tcattattattcatagagattcagtatagtgcaaactgagttcagcatgtagagaaag 7051
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,535
Number of Sequences: 1807
Number of extensions: 34535
Number of successful extensions: 3487
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)