BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZB06FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 478 e-134
>3x_Contig1654
Length = 17174
Score = 478 bits (241), Expect = e-134
Identities = 248/249 (99%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 85 tgtctgactcgccacaattgatcaacagcgacccagctggtgaaggttggatcatcaaga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2017 tgtctgactcgccacaattgatcaacagcgacccagctggtgaaggttggatcatcaaga 2076
Query: 145 ttaaaattaacgatgaggcagatttacaatccgatgaattgttatcgctagagcagtacg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2077 ttaaaattaacgatgaggcagatttacaatccgatgaattgttatcgctagagcagtacg 2136
Query: 205 aagctcatctaaaggaagaccattgattcaataatatccagctacatgtttaatgcggcg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2137 aagctcatctaaaggaagaccattgattcaataatatccagctacatgtttaatgcggcg 2196
Query: 265 tgtttatatgtgtgcgttggtatcacgatatatgtatacacttaagtatcaagtttttta 324
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2197 tgtttatatgtgtgcgttggtatcacgatatatgtatacacttaagtatcaag-ttttta 2255
Query: 325 aactatttt 333
|||||||||
Sbjct: 2256 aactatttt 2264
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,429
Number of Sequences: 1807
Number of extensions: 17429
Number of successful extensions: 399
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)