BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZB06RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig874 1594 0.0
>3x_Contig874
Length = 1825
Score = 1594 bits (804), Expect = 0.0
Identities = 887/906 (97%), Gaps = 7/906 (0%)
Strand = Plus / Plus
Query: 44 ttttatattgctgagcaaactatttcaccatcctcccaagtcatcttacttctatatgat 103
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 511 ttttatattgctgagcaaactagt-caccatcctcccaagtcatcttacttctatatgat 569
Query: 104 tcccgaatcaaacatcagagtagatggtaccacaattcccaaatctcgattcctaggtaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tcccgaatcaaacatcagagtagatggtaccacaattcccaaatctcgattcctaggtaa 629
Query: 164 ctccacagctgcaatgatggaagggttatccgtattgcaatttttggacatcttttatcc 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 630 ctccacagctgcaatgatggaagggttatccgtattgcaatttttggacatcactgaccc 689
Query: 224 aaagacaggaaagcctgaaaaatatacacttactcaacctaatatgtacgctagagggat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aaagacaggaaagcctgaaaaatatacacttactcaacctaatatgtacgctagagggat 749
Query: 284 tctttttggtaaaatgaaacttgaattaggtgaccacatgcttattaagggccccaaata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tctttttggtaaaatgaaacttgaattaggtgaccacatgcttattaagggccccaaata 809
Query: 344 ccagatcgatatagaattcaagactaagggttttatttcaggtacctatgatgccattga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ccagatcgatatagaattcaagactaagggttttatttcaggtacctatgatgccattga 869
Query: 404 aggtattatcaaagattataatgaaaaagaatactatgaaattactggtaaatggaacga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 aggtattatcaaagattataatgaaaaagaatactatgaaattactggtaaatggaacga 929
Query: 464 tttaatctattataaagatttaagagaaaagcattcgaagaaggctgtcttatttgatac 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 tttaatctattataaagatttaagagaaaagcattcgaagaaggctgtcttatttgatac 989
Query: 524 taacacggcagtaccactcaagccaagcgttagaccactagaagagcagggtgaatttga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 taacacggcagtaccactcaagccaagcgttagaccactagaagagcagggtgaatttga 1049
Query: 584 gtcaagaagactttggaagaaagtcaccgacgcgttggcgaaacgtgatcatgttgaagc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 gtcaagaagactttggaagaaagtcaccgacgcgttggcgaaacgtgatcatgttgaagc 1109
Query: 644 gacagacgagaaattcaaaatagaaaacaaccagagaattttagccaaaaagaggatcga 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 gacagacgagaaattcaaaatagaaaacaaccagagaattttagccaaaaagaggatcga 1169
Query: 704 agatggcgtcgaattccatccaaaactgttcagaactgcttctcctggcgatgatttaga 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 agatggcgtcgaattccatccaaaactgttcagaactgcttctcctggcgatgatttaga 1229
Query: 764 atnttatgtctacaaaagcattccacccagtaccgatcacgaatctcatgaggacccaga 823
|| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 1230 attttatgtctacaaaagcattccaccaggtaccgatcacgaatctcatgagga-ccaga 1288
Query: 824 -taaatcaattctcgagattgcaccaatcgttcccggtc-aaaatttactgaaaaaattt 881
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||
Sbjct: 1289 ttaaatcaattctcgagattgcaccaatcgtccccggtcaaaaatttactgaaaaatttt 1348
Query: 882 ctatttccgcttaccaaaagc-tgatattcaacaaaa-nagctt-attagtaggcatgta 938
||||| ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||
Sbjct: 1349 ctattcccgcttaccaaaagcatgatattcaacaaaaggagcttaattagtaggcatgta 1408
Query: 939 taaaag 944
||||||
Sbjct: 1409 taaaag 1414
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7188
Number of Sequences: 1807
Number of extensions: 7188
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)