BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZB09FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1441 0.0
>3x_Contig1673
Length = 13723
Score = 1441 bits (727), Expect = 0.0
Identities = 845/868 (97%), Gaps = 14/868 (1%)
Strand = Plus / Minus
Query: 87 cgaaaagaccctagaactacaccagtacaatttatagaattaattaactcatataatacc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4709 cgaaaagaccctagaactacaccagtacaatttatagaattaattaactcatataatacc 4650
Query: 147 aattgcattggaataattaaaggccaatacctagcttgttaggctatgactgggtactgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4649 aattgcattggaataattaaaggccaatacctagcttgttaggctatgactgggtactgt 4590
Query: 207 tgctgtgacaggaatctctgtaaaagctgtcaatggatgccagttggatcatgatgtacg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4589 tgctgtgacaggaatctctgtaaaagctgtcaatggatgccagttggatcatgatgtacg 4530
Query: 267 gttttgatgtttttcataatgaaaacacaggttttggcgcaggttgatcaataaaggctt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4529 gttttgatgtttttcataatgaaaacacaggttttggcgcaggttgatcaataaaggctt 4470
Query: 327 cttacattactgctgaatgacaaactgatgggcagtgagagagtacaaggtctgcaaact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4469 cttacattactgctgaatgacaaactgatgggcagtgagagagtacaaggtctgcaaact 4410
Query: 387 cttttatagtgggctaaaaataagtaaacaatggtagagctgctaaaagagaattttttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4409 cttttatagtgggctaaaaataagtaaacaatggtagagctgctaaaagagaattttttt 4350
Query: 447 cagaacttactaactgttttaaaagggtatgtgaatataaaaacaacacatttttcattc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4349 cagaacttactaactgttttaaaagggtatgtgaatataaaaacaacacatttttcattc 4290
Query: 507 gaattatgttgcattcgcacatgtttttgtctagaatcggtgataataataaattaaaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4289 gaattatgttgcattcgcacatgtttttgtctagaatcggtgataataataaattaaaga 4230
Query: 567 ccagcatacgatgacctgnggttcctcaagtctttattttatgttntcagtgttagattt 626
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4229 ccagcatacgatgacctggggttcctcaagtctttattttatgttttcagtgttagattt 4170
Query: 627 gccaaagcatgattttattttacaatcaaatactaacagtattaattttattttgattta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4169 gccaaagcatgattttattttacaatcaaatactaacagtattaattttattttgattta 4110
Query: 687 attagtgcatcttcgaaatgcagagctttagatgaaagggttcctaaagaattctacgag 746
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4109 attagtgcatcttcgaaatgcagagctttagatgaaaggtttcctaaagaattctacgag 4050
Query: 747 ccttgtccaacacacatatacgattcttacgttgaagtttcttagggccaagtttgtatg 806
||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |||
Sbjct: 4049 cctgatccaacacacatatacgattcttacg-tgaagtttctaagggccaagtttg-atg 3992
Query: 807 aaaatccagatatcaaaaattagcagaaaatatttgattcaatttccattatctgtaaaa 866
|||||||||||||||||| |||||||| ||| ||||||||||||||| |||||| | ||
Sbjct: 3991 aaaatccagatatcaaaa--tagcagaagata-ttgattcaatttcca-tatctg-ataa 3937
Query: 867 atttgcctagtggagaattaccagtaagcttgaagaattctgtttattcggatttaccat 926
||||| ||||||||| |||||||| |||| ||||| |||||||||| |||||||||||||
Sbjct: 3936 atttg-ctagtggag-attaccag-aagcatgaag-attctgttta-tcggatttaccat 3882
Query: 927 ggatattaaattagtaatgctccatttt 954
|||||||||||||| ||||||||||||
Sbjct: 3881 -gatattaaattagt-atgctccatttt 3856
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7435
Number of Sequences: 1807
Number of extensions: 7435
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)