BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZB09RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1464 1558 0.0
>3x_Contig1464
Length = 11693
Score = 1558 bits (786), Expect = 0.0
Identities = 878/904 (97%), Gaps = 4/904 (0%)
Strand = Plus / Plus
Query: 43 cttgttgaatacggtgttaaaaatgaaactgagatctcggtcttcaatcaagaagaatac 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6374 cttgttgaatacggtgttaaaaatgaaactgagatctcggtcttcaatcaagaagaatac 6433
Query: 103 gtctctttcaaagcaaacccagaagagaaatggctatagagtcgcactgcataaaagtta 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6434 gtctctttcaaagcaaacccagaagagaaatggctatagagtcgcactgcataaaagtta 6493
Query: 163 tcgtcaaatcgataatatttcaaatttaatgtaagcaaaaattcatatgacaaattattt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6494 tcgtcaaatcgataatatttcaaatttaatgtaagcaaaaattcatatgacaaaataaca 6553
Query: 223 tcaatatttcttatttctatgtagttatacatatgattgctcctttaaaaccgaaaaatg 282
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6554 gcaatatgtcttatttctatgtagttatacatatgattgctcctttaaaaccgaaaaatg 6613
Query: 283 ttagcgtcggtatgctattgttgtatttcctttagtccaatagatggttgatcaattcac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6614 ttagcgtcggtatgctattgttgtatttcctttagtccaatagatggttgatcaattcac 6673
Query: 343 aggcaaactcgacgttagcaactccatagggtgtcgcactatctaagcctttccgggcca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6674 aggcaaactcgacgttagcaactccatagggtgtcgcactatctaagcctttccgggcca 6733
Query: 403 caatcccatcatgagcatttagtgttttaatatatacaggtacccgtatccaagttaatt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6734 caatcccatcatgagcatttagtgttttaatatatacaggtacccgtatccaagttaatt 6793
Query: 463 tagttaaattttgataaattgtagctctactttcatcgaaaggaagtttcggaaactttg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6794 tagttaaattttgataaattgtagctctactttcatcgaaaggaagtttcggaaactttg 6853
Query: 523 tatgtttccactcttttgaatgagaacgaatgaattgtttccatacgtcattcatttgcg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6854 tatgtttccactcttttgaatgagaacgaatgaattgtttccatacgtcattcatttgcg 6913
Query: 583 cagaatcattagtgagggtgtgatataaactattattctcaatggaccaatccgatcctt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6914 cagaatcattagtgagggtgtgatataaactattattctcaatggaccaatccgatcctt 6973
Query: 643 ggtccttaccgctatcttgttcatcattaatagcatcacctattacatntctaatggatg 702
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6974 ggtccttaccgctatcttgttcatcattaatagcatcacctattacatttctaatggatg 7033
Query: 703 acatgatagtattgaaaacaccattttctcccgattctagcttccaatgtccttttctc- 761
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7034 acatgatagtattgaaaacaccattttctcccgattctagcttccaatgtccttttctca 7093
Query: 762 agagagaatggtgatgantagtagtaatataactgtagcatgttccaatgacattgactg 821
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7094 agagagaatggtgatgataagtagtaatataactgtagcatgttccaatgacattgactg 7153
Query: 822 tgaacaccagtggggaagaaaatgtcattaacgcccatattagcatatttcttgagaacc 881
|||||||||||||| | ||||||||||||||||| || |||| ||||||||||||
Sbjct: 7154 tgaacaccagtgggaagaaaaatgtcattaacgccataataagcaatattcttgagaacc 7213
Query: 882 gttctttttatgtgaccatgggtttcatttttctttaattctgtcaactgcctggttcca 941
|||||||| ||||||| || ||||||| |||||||||||||||||||||| |||| ||||
Sbjct: 7214 gttcttttaatgtgacaat-ggtttca-ttttctttaattctgtcaactg-ctgggtcca 7270
Query: 942 agga 945
||||
Sbjct: 7271 agga 7274
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8111
Number of Sequences: 1807
Number of extensions: 8111
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)