BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZB10FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1706 1548 0.0
>3x_Contig1706
Length = 16303
Score = 1548 bits (781), Expect = 0.0
Identities = 819/829 (98%), Gaps = 2/829 (0%)
Strand = Plus / Minus
Query: 87 ccccacaactgatcctatcttaaatatcatcagtttttgtaaacttatttcaatgacttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14882 ccccacaactgatcctatcttaaatatcatcagtttttgtaaacttatttcaatgacttc 14823
Query: 147 catcctgtaaatatcgtagaactagttaatttaaagaaataacataacatctgttcagtt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14822 catcctgtaaatatcgtagaactagttaatttaaagaaataacataacatctgttcagtt 14763
Query: 207 accaactctatttttatacaaagtttagattactacatccagagcatcatttggtctctt 266
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14762 accaactctattttaa-acaaagtttagattactacatccagagcatcatttggtctctt 14704
Query: 267 cttccagcttaaattcccagttcccaagttcgaataaggaaccaacgactaaccttacat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14703 cttccagcttaaattcccagttcccaagttcgaataaggaaccaacgactaaccttacat 14644
Query: 327 gctgggccatgtgatcaaatgaaagtctgtctaaagtgtccatcgtactgtgaatgtatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14643 gctgggccatgtgatcaaatgaaagtctgtctaaagtgtccatcgtactgtgaatgtatt 14584
Query: 387 tgttagatttgttgaactcactttcaatgacaaaggaagcggggaatccattcttcgttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14583 tgttagatttgttgaactcactttcaatgacaaaggaagcggggaatccattcttcgttg 14524
Query: 447 cacttccgtgatcactacatgcatatccacattccgtttccacgtaaggaatatccaaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14523 cacttccgtgatcactacatgcatatccacattccgtttccacgtaaggaatatccaaga 14464
Query: 507 atcttcttataatcaacttaataaattcagttagacctggcgtggtataatcagtaatga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14463 atcttcttataatcaacttaataaattcagttagacctggcgtggtataatcagtaatga 14404
Query: 567 caccaacatgctcattttctggatcttcaacatatccggtcatatcttgttgcaacattg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14403 caccaacatgctcattttctggatcttcaacatatccggtcatatcttgttgcaacattg 14344
Query: 627 cgacgacttttttgttctcctctgcatacctggtgaagacatccaaagaacctagtaaac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14343 cgacgacttttttgttctcctctgcatacctggtgaagacatccaaagaacctagtaaac 14284
Query: 687 caccttcttctgcactatagaaatggaactcaatggtgttattgggtctgtaacctgttg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14283 caccttcttctgcactatagaaatggaactcaatggtgttattgggtctgtaacctgttg 14224
Query: 747 tagagagatgttcaacgtataatctcaatgcctctagattggttacggtaccagatccat 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14223 tagagagatgttcaacgtataatctcaatgcctctagattggttacggtaccagatccat 14164
Query: 807 cgtcatcagcttctggcgcagcaggtatcgatgggcataaaagggtcatagagtcctgat 866
||||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 14163 cgtcatcagctcctggcgcagcaagtatcgatggcaataaaaggttcatagagtcctgat 14104
Query: 867 gcgatcccattacgacaattgttctcgggagtttgtgcttcttttatcg 915
|||||||||||||||||| |||||||||||||||||||| |||| ||||
Sbjct: 14103 gcgatcccattacgacaa-tgttctcgggagtttgtgctcctttaatcg 14056
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6071
Number of Sequences: 1807
Number of extensions: 6071
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)