BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZB12FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1365 1449 0.0
>3x_Contig1365
Length = 9349
Score = 1449 bits (731), Expect = 0.0
Identities = 827/851 (97%), Gaps = 6/851 (0%)
Strand = Plus / Plus
Query: 82 aacagccacatctagaggttttagatcgtcccataattcatgcaacgcagttgtcaagtt 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8252 aacagccacatctagaggttttagatcgtcccataattcatgcaacgcagttgtcaagtt 8311
Query: 142 atcgtcgcatcgtagaagatctatcacctttttcttgaattgtaccacttccgtaaggag 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8312 atcgtcgcatcgtagaagatctatcacctttttcttgaattgtaccacttccgtaaggag 8371
Query: 202 ttccttggtgttctgttttctatccctcaacataacattcaactgatattgtctttctat 261
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8372 ttccttggtgttctgaattctatccctcaacataacattcaactgatattgtctttctat 8431
Query: 262 ttcttgtagtttctgctcaatagatgtatccgtatgagcgcgagtagctgaatcagttaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8432 ttcttgtagtttctgctcaatagatgtatccgtatgagcgcgagtagctgaatcagttaa 8491
Query: 322 tacaagcttctcgtgatgtagtaatctaaatctattttcttcaagtagatcagagggtat 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8492 tacaagcttctcgtgatgtagtaatctaaatctattttcttcaagtagatcagagggtat 8551
Query: 382 ggataatatattccttaacacatagagctcaagtttatcaaagttcttatccacagagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8552 ggataatatattccttaacacatagagctcaagtttatcaaagttcttatccacagagtt 8611
Query: 442 ttccaacaaagattctagtttggcggtacctattttaatttcgtcagagaaatctttctt 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8612 ttccaacaaagattctagtttggcggtacctattttaatttcgtcagagaaatctttctt 8671
Query: 502 cccaatgatattcctttgcattaaatacttctccatcgcattagtgcacttgtacataat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8672 cccaatgatattcctttgcattaaatacttctccatcgcattagtgcacttgtacataat 8731
Query: 562 ctcattgacggcattgataatgtcgtcaactaaagaaattggtggataacccaaatgttc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8732 ctcattgacggcattgataatgtcgtcaactaaagaaattggtggataacccaaatgttc 8791
Query: 622 cgtcaacaaggacgtactctgcatagttggtgtagtcattggatatttttaaagtgacct 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8792 cgtcaacaaggacgtactctgcatagttggtgtagtcattggatatttttaaagtgacct 8851
Query: 682 cactaagtggctgtagagtccaggtcacttggagctattctgctctgttctggttttctg 741
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 8852 cactaagtggctgtagagtccaggtcacttggagctattctgctctgttctgttttcctg 8911
Query: 742 cgtttgttgatcttttatgttctgtttttattttcgcgaacac-tgaattattagaaagt 800
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 8912 cgtttgttgatcttttatgttctgtttttattttcgcgaacacttgaataattagaaagt 8971
Query: 801 gcatacatactgacaaaatattattcaacccagtacttgaattaaaga-gggattgaaat 859
||||||| |||||||||||||||| ||| |||||| ||||||||||| || || |||||
Sbjct: 8972 gcatacaaactgacaaaatattatacaa-ccagtaactgaattaaagatggaatagaaat 9030
Query: 860 tagtagtatt-ttttatacacatatggctcctagaaat-atttcattttacctagtctca 917
||||||| ||| |||||||||||||| |||||||| ||||||| | | |||||||||
Sbjct: 9031 agttagtattatttaatacacatatggct-ctagaaataatttcatataaactagtctca 9089
Query: 918 ctttaatcact 928
|||||||||||
Sbjct: 9090 ctttaatcact 9100
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7013
Number of Sequences: 1807
Number of extensions: 7013
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)