BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC02FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1425 1556 0.0
>3x_Contig1425
Length = 7919
Score = 1556 bits (785), Expect = 0.0
Identities = 831/843 (98%), Gaps = 4/843 (0%)
Strand = Plus / Minus
Query: 91 catttgcgttggggaattgattgttgagtttgtcggaaatttggtattttccggtatatc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7342 catttgcgttggggaattgattgttgagtttgtcggaaatttggtattttccggtatatc 7283
Query: 151 ctgtaagtgactgttagatggtggtggtgaatctgcagtaggcatttcaaatcctgcctt 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7282 ctgtaagtgactgttagatggtggtggtgaatctgcagtaggcatttcaaatcctgcctt 7223
Query: 211 agaatctgcatgtgagatgtgattaaatccaaatgggacagaaatttttaacttaggagg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7222 agaatctgcatgtgagatgtgattaaatccaaatgggacagaaatttttaacttaggagg 7163
Query: 271 ttcttctttacttgatttattttgaaacagttttaagaggctgttcttcttcttcttgaa 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7162 ttcttctttacttgatttattttgaaacagttttaagaggctgttcttcttcttcttgaa 7103
Query: 331 agatttctttccagattgtttatcatacgcatttggcggcaatggaggaagattaatgtt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7102 agatttctttccagattgtttatcatacgcatttggcggcaatggaggaagattaatgtt 7043
Query: 391 tttcctattacttaagacaggtttatcactattgatcattacaacgcccaattcatcatc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7042 tttcctattacttaagacaggtttatcactattgatcattacaacgcccaattcatcatc 6983
Query: 451 atcgtcagaatccagaagctggtgagcttgtaaaccatataatttttctgtttcatcgtc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6982 atcgtcagaatccagaagctggtgagcttgtaaaccatataatttttctgtttcatcgtc 6923
Query: 511 ttcatcgagccagatcgacttgatctgaggtacgttcatcataagtattggcccagatct 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6922 ttcatcgagccagatcgacttgatctgaggtacgttcatcataagtattggcccagatct 6863
Query: 571 gttggttgttttattcggcaatgcctggtttctgatgattcaaatcatggcctttgtacc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6862 gttggttgttttattcggcaatgcctggtttctgatgattcaaatcatggcctttgtacc 6803
Query: 631 ctggatcatgtttatccgtttatatatacatatatcggccgcgtccacagtggtaatgtt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6802 ctggatcatgtttatccgtttatatatacatatatcggccgcgtccacagtggtaatgtt 6743
Query: 691 tcatgcattcctaggtttcacaattttctgacatttttcgcatctatggttaactactac 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6742 tcatgcattcctaggtttcacaattttctgacatttttcgcatctatggttaactactac 6683
Query: 751 tggattcagttaatttaggaattcctatattaggtaaaaacacgatttttcattttcgca 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6682 tggattcagttaatttaggaattcctatattaggtaaaaacacgatttttcattttcgca 6623
Query: 811 ccctctttcagaatgcagatacgtttcgttgatcgaaaa-taatgttttctaacctttct 869
||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 6622 ccctcttcaggaatgcagatacgtttcgttgatcgaaaattaatgttttctaacctctct 6563
Query: 870 ta-tcaccatcgccaatccggtttttttctttttttcttgggnttcatgtcctctttttt 928
| |||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct: 6562 aattcaccatcgccaatccggtttttt--cttttttcttgggtttcatgtcttctttttt 6505
Query: 929 tct 931
|||
Sbjct: 6504 tct 6502
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,291
Number of Sequences: 1807
Number of extensions: 10291
Number of successful extensions: 176
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)