BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC02RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1352 1699 0.0
>3x_Contig1352
Length = 6660
Score = 1699 bits (857), Expect = 0.0
Identities = 885/895 (98%), Gaps = 1/895 (0%)
Strand = Plus / Plus
Query: 37 aacacgctttaatttctctccatgcctcatatattggtggagactgttcgaattataaga 96
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1807 aacaagctttaatttctctccatgcctcatatattggtggagactgttcgaattataaga 1866
Query: 97 agtggtattttgccgcccaactagatttagatgaagagattggattcccttacatgaaac 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1867 agtggtattttgccgcccaactagatttagatgaagagattggattcccttacatgaaac 1926
Query: 157 ttcatggtaaatcaaagaagagaaatgcaaagttcgcaagcgagaaaggtatttcatnna 216
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1927 ttcatggtaaatcaaagaagagaaatgcaaagttcgcaagcgagaaaggtatttcaatta 1986
Query: 217 tagagcaacaacgactgtggaaacagaagcaggatgaatttttggagaattatcccaaaa 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987 aagagcaacaacgactgtggaaacagaagcaggatgaatttttggagaattatcccaaaa 2046
Query: 277 ttataatgtcagaaaatgagaggaaaactggttcctcatataaagccgccgattacaaat 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2047 ttataatgtcagaaaatgagaggaaaactggttcctcatataaagccgccgattacaaat 2106
Query: 337 ggaaaatgaagatgaactctcttacttcatcacaaatgactagacagctagcgttatatt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2107 ggaaaatgaagatgaactctcttacttcatcacaaatgactagacagctagcgttatatt 2166
Query: 397 tattaatctggggagaagcaaaccaattgagatttacaccagaatgcctctgttttatat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2167 tattaatctggggagaagcaaaccaattgagatttacaccagaatgcctctgttttatat 2226
Query: 457 ttaagtgcgcattagattatgattctagcttgcaggacatcgaagattcatcccaagatg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2227 ttaagtgcgcattagattatgattctagcttgcaggacatcgaagattcatcccaagatg 2286
Query: 517 aatttacttttctaaataatatcatcaccccgatttacaaattcatcagggatcaagttt 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2287 aatttacttttctaaataatatcatcaccccgatttacaaattcatcagggatcaagttt 2346
Query: 577 atacactagattcacagggcaaactaataagaagggaaaaggaccacaaggatattattg 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2347 atacactagattcacagggcaaactaataagaagggaaaaggaccacaaggatattattg 2406
Query: 637 ggtacgatgatgtgaatcaattattttggtatcctgaaggaatcgaacggattgtcctaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2407 ggtacgatgatgtgaatcaattattttggtatcctgaaggaatcgaacggattgtcctaa 2466
Query: 697 aatctggagcaagattggttgatacccctttagaaaatagatttcttctattgaaagacg 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2467 aatctggagcaagattggttgatacccctttagaaaatagatttcttctattgaaagacg 2526
Query: 757 taaactgggatgtcgntntctataagacatactatgagacaaggacatggctacactcaa 816
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2527 taaactgggatgtcgttttctataagacatactatgagacaaggacatggctacactcaa 2586
Query: 817 tgacanatttcaacaggatttggatcattcattttgcaacgttttgggttctttacttcg 876
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2587 tgacaaatttcaacaggatttggatcattcattttgcaacgtttt-ggttctttacttcg 2645
Query: 877 ttcaatgcaccaacgttatacagcanaaattacattcagacattggataacccac 931
||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2646 ttcaatgcaccaacgttatacagcaaaaattacattcagacattggataacccac 2700
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7558
Number of Sequences: 1807
Number of extensions: 7558
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)