BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC03FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig596 1491 0.0
>3x_Contig596
Length = 2286
Score = 1491 bits (752), Expect = 0.0
Identities = 849/874 (97%), Gaps = 8/874 (0%)
Strand = Plus / Minus
Query: 84 ttaagttaagaagtaccactaaatggcccaacttgttttgaagattttcattgctgagca 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 ttaagttaagaagtaccactaaatggcccaacttgttttgaagattttcattgctgagca 895
Query: 144 tatcaacaaatgacttagcgacttcgttaaaaattcttaattcaatagaaagatcagcag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tatcaacaaatgacttagcgacttcgttaaaaattcttaattcaatagaaagatcagcag 835
Query: 204 atgctaacgtttnnttccnctggtgtgatagtctcaatatcgccctgaagattatggaaa 263
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 atgctaacgtcattttcctctggtgtgatagtctcaatatcgccctgaagattatggaaa 775
Query: 264 tgcaggactgcgtggtatggaacaaaaacctgttctgaagagtatttttgaacttagcag 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tgcaggactgcgtggtatggaacaaaaacctgttctgaagagtatttttgaacttagcag 715
Query: 324 ccgtgttgtcggttttcacatcattttcagctttagcccccttataaagtagtaaagaag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ccgtgttgtcggttttcacatcattttcagctttagcccccttataaagtagtaaagaag 655
Query: 384 gagtttcgggggatgtcgccggtcttgtttgttctgaaactatgattggcaagcatccac 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gagtttcgggggatgtcgccggtcttgtttgttctgaaactatgattggcaagcatccac 595
Query: 444 ggatgtaatactcttccaacgcacacctttcaaaagttgtccttaaaagatggatcaaag 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ggatgtaatactcttccaacgcacacctttcaaaagttgtccttaaaagatggatcaaag 535
Query: 504 aaaacccgttctcgtcaaagtattcgagtatttgatgaactctttccggaaacaatgaaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aaaacccgttctcgtcaaagtattcgagtatttgatgaactctttccggaaacaatgaaa 475
Query: 564 agcggtcaatgtacacagaggtaattgtggatacaatgacttgtaagatattcacttttc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agcggtcaatgtacacagaggtaattgtggatacaatgacttgtaagatattcacttttc 415
Query: 624 gaagcgtattttccacagtatctggatccaagctcaaaacatatgacttgtcctgatcgt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaagcgtattttccacagtatctggatccaagctcaaaacatatgacttgtcctgatcgt 355
Query: 684 aattgatgaagtcagaaagatcatccaaagtatattttaaaagtgctaataaggtaggta 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aattgatgaagtcagaaagatcatccaaagtatattttaaaagtgctaataaggtaggta 295
Query: 744 gggcatatttgctatcttcgtcatcgaacgtctttagagcatcagttgaggtttaagaag 803
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 294 gggcatatttgctatcttcgtcatcgaacgtctttagagcatcag-tgaagtttaagaag 236
Query: 804 cactgcgaatcgatataatcataggcgggcctttncggnaattatcacagaaaacaactt 863
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 235 cactgcgaatcgatataatcataggcgggcctttccgg-aattatcacagaaaacaactt 177
Query: 864 tnttaggatcaattcctttttgagagttattgtgaacccagnaaacgttttttcatcatt 923
| |||||||||| || ||||||||||| || |||||||| ||||| |||| |||||||
Sbjct: 176 t-ttaggatcaa-tcttttttgagagtaat--ggaacccaggaaacg-ttttccatcatt 122
Query: 924 tcgaagaaatactccttgaaatggttcttaaata 957
|||||||| |||||| ||||| |||| |||||
Sbjct: 121 ccgaagaaa-actcctgaaaatgtttctaaaata 89
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6773
Number of Sequences: 1807
Number of extensions: 6773
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)