BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC03RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig903 1673 0.0
>3x_Contig903
Length = 4000
Score = 1673 bits (844), Expect = 0.0
Identities = 887/900 (98%), Gaps = 1/900 (0%)
Strand = Plus / Minus
Query: 43 cttgtccctagattcattaccgacctctgtggttgtcagtaagacaaattgcttcaaaat 102
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2678 cttgtccctagattcattaccgacccctgtggttgtcagtaagacaaattgcttcaaaat 2619
Query: 103 gtatttgtgttgagttgccaattgttcgttttgactcaattgttcttcgagcacgggatt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2618 gtatttgtgttgagttgccaattgttcgttttgactcaattgttcttcgagcacgggatt 2559
Query: 163 gcgcttgatctcttgtaaaaggagttctagcaaatcttggttctgctcgatttgc-tgca 221
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 2558 gcgcttgatctcttgtaaaaggagttctagcaaatcttggttctgctcgagttgcgtgca 2499
Query: 222 taatacagttgataccttgcttgtacgagcaagcctttcgaaaaattcgattgggaattt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2498 taatacagttgataccttgcttgtacgagcaagcctttcgaaaaattcgattgggaattt 2439
Query: 282 ctcattcttcaataatgttctgatttgctctatctcttctgttggcatctcatcgtatga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 ctcattcttcaataatgttctgatttgctctatctcttctgttggcatctcatcgtatga 2379
Query: 342 accaataacaatccttctgaccctctttcccaactgtaacttgctccatatcagtcttgc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2378 accaataacaatccttctgaccctctttcccaactgtaacttgctccatatcagtcttgc 2319
Query: 402 cactactattcccgcgatggaattgaaaagccaaagtggtaatattgggaatagttcaaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2318 cactactattcccgcgatggaattgaaaagccaaagtggtaatattgggaatagttcaaa 2259
Query: 462 tgcaaggaaaaggaaaaagccactgcgaccagtgacagttgatatgatccattggaaaat 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 tgcaaggaaaaggaaaaagccactgcgaccagtgacagttgatatgatccattggaaaat 2199
Query: 522 gacccgtggtgattcccatccaatgttcatccgcgctagtatgccgccagctggttgatt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 gacccgtggtgattcccatccaatgttcatccgcgctagtatgccgccagctggttgatt 2139
Query: 582 tgtagctccagtttcagcattggggttaggcaagtcgggaagtagttcttcgtctacatt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 tgtagctccagtttcagcattggggttaggcaagtcgggaagtagttcttcgtctacatt 2079
Query: 642 atactgtacttcattgcgttgaatcttttcgccaagagcgttttctatcgctgctcttgc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 atactgtacttcattgcgttgaatcttttcgccaagagcgttttctatcgctgctcttgc 2019
Query: 702 agttccagacaacttcatacatttctctcccaaggtgatttcgtccttagagagccttaa 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 agttccagacaacttcatacatttctctcccaaggtgatttcgtccttagagagccttaa 1959
Query: 762 ggtcttgtcgccaatttgtagctcgaaatactgggcggccaactgtgactgtggtataat 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 ggtcttgtcgccaatttgtagctcgaaatactgggcggccaactgtgactgtggtataat 1899
Query: 822 gtagtcttgatcgtctacagttatgcgttcataagtctcatacgaccctgtcacttggca 881
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct: 1898 gtagtcttgatcgtctacagttatgcgttcataagtctcatacgaccttgtcactggcaa 1839
Query: 882 tccatcagtcattagaatgggaactttctgctccctgagaaccgctggagtccttgttgg 941
|||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||
Sbjct: 1838 tccatcagtcattagaatgggaacttctggctccgtgagaacggctgaagtccttgttgg 1779
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6280
Number of Sequences: 1807
Number of extensions: 6280
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)