BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC04FM1.SCF screened BAC_end
(859 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1483 0.0
>3x_Contig1770
Length = 29267
Score = 1483 bits (748), Expect = 0.0
Identities = 766/771 (99%), Gaps = 1/771 (0%)
Strand = Plus / Minus
Query: 87 atcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgttggt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8035 atcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgttggt 7976
Query: 147 gagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgtcagt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7975 gagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgtcagt 7916
Query: 207 ccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaaacat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7915 ccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaaacat 7856
Query: 267 gaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaacaga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7855 gaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaacaga 7796
Query: 327 ttctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggtcgaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7795 ttctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggtcgaa 7736
Query: 387 gttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggatggtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7735 gttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggatggtt 7676
Query: 447 gtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggctcgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7675 gtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggctcgt 7616
Query: 507 catttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaagtat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7615 catttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaagtat 7556
Query: 567 caacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttactggat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7555 caacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttactggat 7496
Query: 627 aacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccatgtat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7495 aacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccatgtat 7436
Query: 687 tatggtcaacagttccaggaagatattgatttctacaacttcgatgaaagagctaaggag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7435 tatggtcaacagttccaggaagatattgatttctacaacttcgatgaaagagctaaggag 7376
Query: 747 ttggaggagaactt-atatttttaaatgctaccaagaatttcttgaatgctacacagatg 805
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7375 ttggaggagaacttaatattttggaatgctaccaagaatttcttgaatgctacacagatg 7316
Query: 806 agagccatgattcanatacatggacctggtgatcctactggttgtggtgaa 856
||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7315 agagcaatgattcaaatacatggacctggtgatcctactggttgtggtgaa 7265
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5722
Number of Sequences: 1807
Number of extensions: 5722
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 859
length of database: 10,358,551
effective HSP length: 16
effective length of query: 843
effective length of database: 10,329,639
effective search space: 8707885677
effective search space used: 8707885677
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)