BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC04RM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1463 1566 0.0
>3x_Contig1463
Length = 9363
Score = 1566 bits (790), Expect = 0.0
Identities = 825/833 (99%), Gaps = 3/833 (0%)
Strand = Plus / Plus
Query: 46 gcttgtcaccaagtggaggtagtgctgttcccggtgcaggaaacatgaccggaggtgtta 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 gcttgtcaccaagtggaggtagtgctgttcccggtgcaggaaacatgaccggaggtgtta 1821
Query: 106 atgattctgccatcccaggttctgacctgatgatgcattatccccaacagtatatgaacc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 atgattctgccatcccaggttctgacctgatgatgcattatccccaacagtatatgaacc 1881
Query: 166 ataatgggcaaaggccaatgttctggatgaatccggatttgaattctagtgctctttgac 225
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 1882 ataatgggcaaaggccaatgttctggatgaatccggatttgaattctagtgc-catcgac 1940
Query: 226 gacaccactgcaggcgaagatccgcagaatcaggattcctttgtgcgcggtgcatcattc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1941 gacaccactgcaggcgaagatccgcagaatcaggattcctttgtgcgcggtgcatcattc 2000
Query: 286 actttagaatcttctgaacaggggaatgatgccaaggtgccaggtgctaacacttctaga 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2001 actttagaatcttctgaacaggggaatgatgccaaggtgccaggtgctaacacttctaga 2060
Query: 346 agacaaactttccatgcagtgtcagctactgacttgttgaacaattctacttccagtccc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2061 agacaaactttccatgcagtgtcagctactgacttgttgaacaattctacttccagtccc 2120
Query: 406 actgaaacgacggatgccactggtaccaatgcatcagcaacatcacccgaagcttctgcc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2121 actgaaacgacggatgccactggtaccaatgcatcagcaacatcacccgaagcttctgcc 2180
Query: 466 tcgaaaaaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttacaccggt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2181 tcgaaaaaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttacaccggt 2240
Query: 526 gcattgctgcaaccaaatcctgtactatctggccatccactgggtcatcatccccatcct 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2241 gcattgctgcaaccaaatcctgtactatctggccatccactgggtcatcatccccatcct 2300
Query: 586 atcggttccccattccctggttacggttttaatacagctttctctcctgtcccgggccct 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2301 atcggttccccattccctggttacggttttaatacagctttctctcctgtcccgggccct 2360
Query: 646 actaacacgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaaacagc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2361 actaacacgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaaacagc 2420
Query: 706 agcggcgatccaagtggccaatctaaccgtcatgtacactctggaactaattccccagaa 765
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2421 agcggcgatccaagtggccaatctaaccgtcatgtacactctggaactaattccccagga 2480
Query: 766 ttgagtcaacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctgctcct 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2481 ttgagtcaacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctgctcct 2540
Query: 826 cacggtagtcctaacttnnctggtt-cacaccctcatcatcccggtcacgcag 877
||||||||||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct: 2541 cacggtagtcctaactt-cctggttccacaccctcatcatccgggtcacgcag 2592
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4072
Number of Sequences: 1807
Number of extensions: 4072
Number of successful extensions: 22
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)