BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC12ZC05FM1.SCF screened BAC_end (956 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1647 799 0.0 >3x_Contig1647 Length = 14353 Score = 799 bits (403), Expect = 0.0 Identities = 554/603 (91%), Gaps = 1/603 (0%) Strand = Plus / Plus Query: 89 tctcacgctgataattttgttccaatttgggtcgctttgggattagcagtttctctaact 148 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4553 tctcacggtgataattttgttccaatttgggtcgctttgggattagcagtttctctaact 4612 Query: 149 ttattttgcgccttccttatgtctgattctagacatgaaatggccaggttaaagtcccaa 208 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 4613 ttagtttgcgccttccttatgtctgaatctagacatgaaatggccaggttaaagtcccaa 4672 Query: 209 actaagtttttgatatttatggagagcatcaatagtgccagatcacggcaatcagatatg 268 |||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct: 4673 actaagttcctgagacgaagggagagcatcaatagtgccagatcacggcaatcagatatg 4732 Query: 269 gcaggtggagccaatcggtcatatacagtactgaaatatactgctctacaattcttcgac 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4733 gcaggtggagccaatcggtcatatacagtactgaaatatactgctctacaattcttcgac 4792 Query: 329 tttttgtctacagtgagaaatctatggattgctcctactgtcgtcggtttcttggttcca 388 ||||||||| ||||||||||| |||||||||||||||||| || ||||| |||||||||| Sbjct: 4793 tttttgtctccagtgagaaatttatggattgctcctactgccgccggttccttggttcca 4852 Query: 389 agatacatggttttattgcttgttggaatagatattatgttcgccatatctacagcggta 448 ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| | Sbjct: 4853 agatacatggttttattgcttgttggaatagatatcatgtttgtcatatctacagcggca 4912 Query: 449 tctataccggcgattgttttagcctttgttttcatgttcggctggagttcatagcaatta 508 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 4913 tctataccggcgattgttttagcctttgttttcatgttcggttggagttcagagcaatta 4972 Query: 509 ggttactttgtgtctttaatgggactcggcaaggttgctgttttattagttcttgtaccg 568 |||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||| Sbjct: 4973 ggttactttgtgtctttaatgggactcggcaaggctgctgctttattagttctcgcaccg 5032 Query: 569 tttgcactacatcttccgtataaactattcagaacgttatcaatatctgtggacctcaca 628 | |||||||||||| | | |||| ||||| ||||||||||| ||||||||||| |||| Sbjct: 5033 ctggcactacatcttttgaagaaacgattcaaaacgttatcaaaatctgtggaccacaca 5092 Query: 629 tacatttttg-actacgtgttcgttgcttttttaatttatttttcttagtagtattattg 687 |||| ||| |||||||||| || |||||||| | || ||| ||||||||||| || Sbjct: 5093 gacatggttgtactacgtgtttcttccttttttattctactttcgctagtagtattagtg 5152 Query: 688 att 690 ||| Sbjct: 5153 att 5155 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,280 Number of Sequences: 1807 Number of extensions: 14280 Number of successful extensions: 89 Number of sequences better than 1.0e-20: 1 length of query: 956 length of database: 10,358,551 effective HSP length: 16 effective length of query: 940 effective length of database: 10,329,639 effective search space: 9709860660 effective search space used: 9709860660 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)