BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC06RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1618 1108 0.0
3x_Contig862 597 e-170
>3x_Contig1618
Length = 12146
Score = 1108 bits (559), Expect = 0.0
Identities = 594/603 (98%), Gaps = 2/603 (0%)
Strand = Plus / Plus
Query: 343 tgtgggagatatgatattccatgaacttaatcaaagtttcgttagatctgttcatgatgt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgggagatatgatattccatgaacttaatcaaagtttcgttagatctgttcatgatgt 60
Query: 403 tgatagcttcagtgacgacttctctgtcaacgttctttagaacaccgtgaataatctcga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgatagcttcagtgacgacttctctgtcaacgttctttagaacaccgtgaataatctcga 120
Query: 463 agtatagagtcaacaaagattgtctagcccagttccaagaagaatcgaacactctagcct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtatagagtcaacaaagattgtctagcccagttccaagaagaatcgaacactctagcct 180
Query: 523 tcttcttagagaaagaagtagagacaccttgaatgaagtactcacccaattcttctgtta 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcttcttagagaaagaagtagagacaccttgaatgaagtactcacccaattcttctgtta 240
Query: 583 ggtaatccaattgaccttgtaattcggcaacggtatccttttccttcaagaatttctttt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtaatccaattgaccttgtaattcggcaacggtatccttttccttcaagaatttctttt 300
Query: 643 caccttggttcaaatccatcttcaagtaacgagcaaggacttctaattgttgacgagcca 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caccttggttcaaatccatcttcaagtaacgagcaaggacttctaattgttgacgagcca 360
Query: 703 acactctttggtccttgttcaattcatcgaaggcagctgcgtcaatggtagcaccaccgg 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acactctttggtccttgttcaattcatcgaaggcagctgcgtcaatggtagcaccaccgg 420
Query: 763 caccacctgcaccacctgcagctgcaccagcagatgcggctgcagccaagttgacaccag 822
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 421 caccaccggcaccacctgcagctgcaccagcagaggcggcggcagccaagttgacaccag 480
Query: 823 caattgaagcgtatttttgagccatatagtccaagaatgcctttgcatcagcttcagaag 882
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 481 caattgaagcgtatttttgagccatagagtccaagaatgcctttgcatcagcttcagaag 540
Query: 883 gcatacgagcagctggtttcggtagttaaagcgaccagtaaaacggaatctttgtctacc 942
|||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 541 caatacgagcagctgg-ttcgttagttaaagcgaccagtaaaacggaatc-ttgtctacc 598
Query: 943 agg 945
|||
Sbjct: 599 agg 601
>3x_Contig862
Length = 2082
Score = 597 bits (301), Expect = e-170
Identities = 310/313 (99%)
Strand = Plus / Plus
Query: 47 ggcagaaatggccttgtaaactctcttcaaatcttcagtgatagaaccttcgttgatctt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1759 ggcagaaatggccttgtaaactctcttcaaatcttcagtgatagaaccttcgttgatctt 1818
Query: 107 ggtcaatggaccaccaacggccatttcttgaacatattgagacaattttctgacggtttc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1819 ggtcaatggaccaccaacggccatttcttgaacatattgagacaattttctgacggtttc 1878
Query: 167 tcttggttcttcagaatatttaatgttaccattcttgtcgacaacagtcttttttccagt 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1879 tcttggttcttcagaatatttaatgttaccattcttgtcgacaacagtctttggaccagt 1938
Query: 227 tggtttagaaatatccttgtaaacagggtccatatttaaaacgtgtttacagttttcgat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1939 tggtttagaaatatccttgtaaacagggtccatatttaaaacgtgtttacagttttcgat 1998
Query: 287 caactgttgacccaattgcttggccaacttgtagttctcaccttctgtttcatcagtgtg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1999 caactgttgacccaattgcttggccaacttgtagttctcaccttctgtttcatcagtgtg 2058
Query: 347 ggagatatgatat 359
|||||||||||||
Sbjct: 2059 ggagatatgatat 2071
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7723
Number of Sequences: 1807
Number of extensions: 7723
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 2
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)