BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC07FM1.SCF screened BAC_end
(856 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 1497 0.0
>3x_Contig1543
Length = 9648
Score = 1497 bits (755), Expect = 0.0
Identities = 764/768 (99%)
Strand = Plus / Minus
Query: 88 tagttatcctcagcagtatgatccgtgtaactgacaaactcttgatccttcccaacgaca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4108 tagttatcctcagcagtatgatccgtgtaactgacaaactcttgatccttcccaacgaca 4049
Query: 148 gaacgcggtatcgtcatcatcggaagtgaagccccatgtcctaatgtgttcctatccagt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4048 gaacgcggtatcgtcatcatcggaagtgaagccccatgtcctaatgtgttcctatccagt 3989
Query: 208 gacaattccagatcgaaatccatatcatcttgatctcgatctagaagatcatatatcgtg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3988 gacaattccagatcgaaatccatatcatcttgatctcgatctagaagatcatatatcgtg 3929
Query: 268 gaagacgtactacttccggtgcttcgatccaaaggttgtaaaagaggggatctgatgaga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3928 gaagacgtactacttccggtgcttcgatccaaaggttgtaaaagaggggatctgatgaga 3869
Query: 328 gaagcaggagtaccgaccaactcattggttaactttaaattctcaatggtcattctatca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3868 gaagcaggagtaccgaccaactcattggttaactttaaattctcaatggtcattctatca 3809
Query: 388 ttttcttgacattgagaagaacagtataacctgtcattatccaattgagcatcgcaatta 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3808 ttttcttgacattgagaagaacagtataacctgtcattatccaattgagcatcgcaatta 3749
Query: 448 ccacgttcaatcaattggccacaaacggtacaataatcgttgaatgctgacatcgtaaac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3748 ccacgttcaatcaattggccacaaacggtacaataatcgttgaatgctgacatcgtaaac 3689
Query: 508 tagtaggtattgcgcagacaggtatcctcggcttcactggcttgtgaaaaggttttctct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3688 tagtaggtattgcgcagacaggtatcctcggcttcactggcttgtgaaaaggttttctct 3629
Query: 568 ttccctatctatctcgtgattacacttgaaatcccctcagctactattttcaccatatac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3628 ttccctatctatctcgtgattacacttgaaatcccctcagctactattttcaccatatac 3569
Query: 628 ccaatatatatattgcttatatatatgtattatataaaaagattatggacatcgtgcctt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3568 ccaatatatatattgcttatatatatgtattatataaaaagattatggacatcgtgcctt 3509
Query: 688 aatctcaactaaaggtgagctgagttttagcaattaggtaatgaaataataatgaccaca 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3508 aatctcaactaaaggtgagctgagttttagcaattaggtaatgaaataataatgaccaca 3449
Query: 748 cacacatgcgagaatgttcaaaacgtctaanatgttctcanggcacacgagcacacatac 807
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 3448 cacacatgcgagaatgttcaaaacgtctaaaatgttctcagggcacacgagcacacatac 3389
Query: 808 accgccagagttggaatttttcttcgtcattacacacanatcgtggca 855
||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 3388 accgccagagttggaatttttctccgtcattacacacaaatcgtggca 3341
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6110
Number of Sequences: 1807
Number of extensions: 6110
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 856
length of database: 10,358,551
effective HSP length: 16
effective length of query: 840
effective length of database: 10,329,639
effective search space: 8676896760
effective search space used: 8676896760
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)