BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC07RM1.SCF screened BAC_end
(862 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 1582 0.0
>3x_Contig1743
Length = 20172
Score = 1582 bits (798), Expect = 0.0
Identities = 809/813 (99%)
Strand = Plus / Minus
Query: 48 taacgatgagcattatatagattgtatgatactaggtgtgtaaagccgccattcgaacca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 taacgatgagcattatatagattgtatgatactaggtgtgtaaagccgccattcgaacca 1948
Query: 108 ttttttagagcttagttcccgggttttatgtcggaatacggaaatattccatacccaata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 ttttttagagcttagttcccgggttttatgtcggaatacggaaatattccatacccaata 1888
Query: 168 aaagatcttgatagcttcacgttatccgaggagacaaggccaacttatgataagttaaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 aaagatcttgatagcttcacgttatccgaggagacaaggccaacttatgataagttaaat 1828
Query: 228 acgcaacaggggaaggtaaaccttcaacacaatagcgctgggcaaatcaagtcggataaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 acgcaacaggggaaggtaaaccttcaacacaatagcgctgggcaaatcaagtcggataaa 1768
Query: 288 acactgccgaaactgagcaatttgaaagacaaattcaagataaggaataataaatatcta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 acactgccgaaactgagcaatttgaaagacaaattcaagataaggaataataaatatcta 1708
Query: 348 cgaagtgcttcttcaccggagaaagaagaacgagataaacagcaaaatacaattgttata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 cgaagtgcttcttcaccggagaaagaagaacgagataaacagcaaaatacaattgttata 1648
Query: 408 gtgactgatgatgaagaaccggagaaacaaactgtgcaacaagacatttaccaggagtat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 gtgactgatgatgaagaaccggagaaacaaactgtgcaacaagacatttaccaggagtat 1588
Query: 468 ataccgagccgaattcataccaccgggcgcgaaagttccaagcacaggaaaattaagtta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 ataccgagccgaattcataccaccgggcgcgaaagttccaagcacaggaaaattaagtta 1528
Query: 528 accaatcgaagatctgccaatcctcagagacaatctgaatcaatagggacaattgttact 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 accaatcgaagatctgccaatcctcagagacaatctgaatcaatagggacaattgttact 1468
Query: 588 caatcaactccaattccagtatcaagcaacatcgatcaaccttcgatattaaacacattt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 caatcaactccaattccagtatcaagcaacatcgatcaaccttcgatattaaacacattt 1408
Query: 648 agtagcagtctcaaatctgtatttgattatgtggatactgtcattgatgtaaggttccca 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 agtagcagtctcaaatctgtatttgattatgtggatactgtcattgatgtaaggttccca 1348
Query: 708 ttgctgatatcatatcgaaggcacgtaaaaatcatgttaattgtaatatttatacttcan 767
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 ttgctgatatcatatcgaaggcacgtaaaaatcatgttaattgtaatatttatacttcag 1288
Query: 768 gtcaactggtatatcgagctactcatcattttgattggcagaagtgtatatcaatgacct 827
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1287 gtcaactggtatatcgagctactcatcattttgattgcaagaagtgtatatcaatgacct 1228
Query: 828 gtatatatatgtatgaactttttaaaattaaag 860
|||||||||||||||||||||||||| ||||||
Sbjct: 1227 gtatatatatgtatgaactttttaaatttaaag 1195
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6509
Number of Sequences: 1807
Number of extensions: 6509
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 862
length of database: 10,358,551
effective HSP length: 16
effective length of query: 846
effective length of database: 10,329,639
effective search space: 8738874594
effective search space used: 8738874594
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)