BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC08RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1410 1663 0.0
>3x_Contig1410
Length = 7640
Score = 1663 bits (839), Expect = 0.0
Identities = 874/884 (98%), Gaps = 2/884 (0%)
Strand = Plus / Plus
Query: 49 agtttggacgttaagatcttggagccagagagcaacgtagagtactggtctaagttgttc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 agtttggacgttaagatcttggagccagagagcaacgtagagtactggtctaagttgttc 1363
Query: 109 ccattgaagaaagttccatgttacgttggttctgatgggtttaagttaacgcaacagctt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 ccattgaagaaagttccatgttacgttggttctgatgggtttaagttaacgcaacagctt 1423
Query: 169 gcaatcttagtttacttggtcaacttgagcgataacaatgctgagattcttgtttctact 228
||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 1424 gcaatcttagtttacttggtcaacttgagcgataacaatgctgagatcca-gcgtctact 1482
Query: 229 aggtaagggcaacaaggaaaaagctgaggtgttgcaatggctatctcttgccaatacaga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1483 aggtaagggcaacaaggaaaaagctgaggtgttgcaatggctatctcttgccaatacaga 1542
Query: 289 cttgtgcctagcttttactcgcggtgcattcccgttgaacggcagaagcccttacaataa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 cttgtgcctagcttttactcgcggtgcattcccgttgaacggcagaagcccttacaataa 1602
Query: 349 gaaacaagtggatgacgcatatgcagaattggacagacttgtccaaaggtacgaacaacg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1603 gaaacaagtggatgacgcatatgcagaattggacagacttgtccaaaggtacgaacaacg 1662
Query: 409 tttgaacgaccacaagtacctcgttggtgaccgtgcgtcccttgcagattatttgagtgc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 tttgaacgaccacaagtacctcgttggtgaccgtgcgtcccttgcagattatttgagtgc 1722
Query: 469 tattattttcactaggatcttcgagactttgtacggaaagaaatggcgtgaagaacatgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 tattattttcactaggatcttcgagactttgtacggaaagaaatggcgtgaagaacatgc 1782
Query: 529 aaagttgacgcaatggttcactaatatcactgaagatccattcgtgtctttcttatggga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 aaagttgacgcaatggttcactaatatcactgaagatccattcgtgtctttcttatggga 1842
Query: 589 gggtattacactctgcgacgaaccattgccaaacccaccaaccaaatgatcgcattgaca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 gggtattacactctgcgacgaaccattgccaaacccaccaaccaaatgatcgcattgaca 1902
Query: 649 aatttcaagtttatacatctctttatatacatgtcttctctatcagtaacactttgtcta 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 aatttcaagtttatacatctctttatatacatgtcttctctatcagtaacactttgtcta 1962
Query: 709 tgagataagcttcaaagatcgtcaagcgagaagttacctcgaacgaattaggtactagcc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 tgagataagcttcaaagatcgtcaagcgagaagttacctcgaacgaattaggtactagcc 2022
Query: 769 ggtctatccggg-aaagcagtcctataagagatagaaattccgggactgtaacagaatgt 827
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 ggtctatccgggaaaagcagtcctataagagatagaaattccgggactgtaacagaatgt 2082
Query: 828 anacatgaaggggtttacgctgtaatagcagtgttcattntnccaccatgttgcatattc 887
| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 2083 aaacatgaaggggtttacgctgtaatagcagtgttcattttcccaccatgttgcatattc 2142
Query: 888 gggatgattactcatattatcgagatttctttccatattaagag 931
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2143 gggatgattactcatattatcgagatttctttccatataaagag 2186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5360
Number of Sequences: 1807
Number of extensions: 5360
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)