BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC09FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1337 1429 0.0
3x_Contig1025 509 e-144
>3x_Contig1337
Length = 7771
Score = 1429 bits (721), Expect = 0.0
Identities = 794/813 (97%), Gaps = 6/813 (0%)
Strand = Plus / Minus
Query: 92 gaagaagagtacttggtaacagctctggtaccttcagaaacagcgtgcttggccaattca 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 gaagaagagtacttggtaacagctctggtaccttcagaaacagcgtgcttggccaattca 2643
Query: 152 cctggcaagatcaatctgacagctgtttggatttctctagcagaaatagtagatttcttg 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2642 cctggcaagatcaatctgacagctgtttggatttctctagcagaaatagtagatttcttg 2583
Query: 212 ttgtaagcagccaacttggaagattcagtagcgattctttcaaagatatcgttaacgaaa 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2582 ttgtaagcagccaacttggaagattcagtagcgattctttcaaagatatcgttaacgaaa 2523
Query: 272 gagttcaagatggacatagacttttgggaaataccagtgtctggatgggtttgcttcaaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2522 gagttcaagatggacatagacttttgggaaataccagtgtctggatgggtttgcttcaaa 2463
Query: 332 accttgtagatgtaagaggagtaagtttcctttctagccttagttctcttcttagatgga 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 accttgtagatgtaagaggagtaagtttcctttctagccttagttctcttcttagatgga 2403
Query: 392 tcggtagaagaggaagtcttcttagcagctggcttcttttcagctggagccttggatgct 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2402 tcggtagaagaggaagtcttcttagcagctggcttcttttcagctggagccttggatgct 2343
Query: 452 ggggccttggatgctttagcagacattatagttgtaatatttgtttttagtaatgtgata 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2342 ggggccttggatgctttagcagacattatagttgtaatatttgtttttagtaatgtgata 2283
Query: 512 gtactggttttcaaataactagtgcttgtcgagggtgaattacagaaccatatatatttc 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2282 gtactggttttcaaataactagtgcttgtcgagggtgaattacagaaccatatatatttc 2223
Query: 572 taatagaaacggataatctataaggagaaagggtaaaagtatccatttagtcagtctctt 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2222 taatagaaacggataatctataaggagaaagggtaaaagtatccatttagtcagtctctt 2163
Query: 632 tatatacaatttggttcttcgccatagtaaaagcgatttgccttccttaaattgtgtctt 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2162 tatatacaatttggttcttcgccatagtaaaagcgatttgccttccttaaattgtgtctt 2103
Query: 692 tggtacttgttntttttgtttttcacgct-aaaaggcatgtcatgaccacagcttcgctg 750
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2102 tggtacttgttttttttgtttttcacgctaaaaaggcatgtcatgaccacagcttcgctg 2043
Query: 751 tggtaaaccggtttactatggcngatggagatattctccgcgcgttaccgttagcacggt 810
|||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct: 2042 tggtaaaccggtttactatggcggatggagatattctccgcgcgtaaccggtagcacggt 1983
Query: 811 ctacgaaaaagttccttttttcggatac-accacggnagttccata--taaaggggatcc 867
||||||||||||| | ||||||||| || ||||||| || |||||| |||||| ||||
Sbjct: 1982 ctacgaaaaagtttcctttttcggaaacaaccacgggag-tccatagtaaaagggaatcc 1924
Query: 868 gttgatttgttg-aaaaatggtttctcgacatc 899
||||||| ||| |||||||||| |||||||||
Sbjct: 1923 gttgattgtttgaaaaaatggttcctcgacatc 1891
>3x_Contig1025
Length = 2581
Score = 509 bits (257), Expect = e-144
Identities = 329/353 (93%)
Strand = Plus / Plus
Query: 95 gaagagtacttggtaacagctctggtaccttcagaaacagcgtgcttggccaattcacct 154
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 345 gaagagtacttggtaacagctctagtaccttcagaaacagcgtgcttagccaattcacct 404
Query: 155 ggcaagatcaatctgacagctgtttggatttctctagcagaaatagtagatttcttgttg 214
|||||||||||||| ||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 405 ggcaagatcaatctaacagcagtttgaatttctctagcagagatggtagacttcttgttg 464
Query: 215 taagcagccaacttggaagattcagtagcgattctttcaaagatatcgttaacgaaagag 274
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 465 taagcagccaacttggacgattcggtagcaattctttcaaagatatcgttaacgaaagag 524
Query: 275 ttcaagatggacatagacttttgggaaataccagtgtctggatgggtttgcttcaaaacc 334
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttcaagatagacatagacttttgggaaataccagtgtctggatgggtttgcttcaaaacc 584
Query: 335 ttgtagatgtaagaggagtaagtttcctttctagccttagttctcttcttagatggatcg 394
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 585 ttgtagatgtaagaagagtaagtttcctttctagccttggttctcttctttgatggatca 644
Query: 395 gtagaagaggaagtcttcttagcagctggcttcttttcagctggagccttgga 447
|||||| ||||||||||| ||||| || |||||||| || |||||||||||
Sbjct: 645 acagaagaagaagtcttcttggcagcaggtttcttttcggcaggagccttgga 697
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6538
Number of Sequences: 1807
Number of extensions: 6538
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)