BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZC10FM1.SCF screened BAC_end
         (857 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig245                                                         1140   0.0  
3x_Contig139                                                          234   2e-61

>3x_Contig245 
          Length = 1434

 Score = 1140 bits (575), Expect = 0.0
 Identities = 578/579 (99%)
 Strand = Plus / Plus

                                                                        
Query: 279  acaaggtaccagccaaagctttcaaaaatacaagtttaaggtcaatcagagaagagctga 338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449  acaaggtaccagccaaagctttcaaaaatacaagtttaaggtcaatcagagaagagctga 508

                                                                        
Query: 339  tcggcaagattatgtctgttgtcgaacaaaaaatgccactaacgagtggaattgcatggg 398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509  tcggcaagattatgtctgttgtcgaacaaaaaatgccactaacgagtggaattgcatggg 568

                                                                        
Query: 399  gttccagcagtaatagctgtaataactccgctactgataatatccacgctaatatcaatt 458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569  gttccagcagtaatagctgtaataactccgctactgataatatccacgctaatatcaatt 628

                                                                        
Query: 459  tcaatggtaacttgaacaatgtaactaattccaacatcgttcatgatcaatacggagcac 518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629  tcaatggtaacttgaacaatgtaactaattccaacatcgttcatgatcaatacggagcac 688

                                                                        
Query: 519  cggtacatcaaagctatagcatagtggcttccacaattggccaaaatacttcgaggccgg 578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  cggtacatcaaagctatagcatagtggcttccacaattggccaaaatacttcgaggccgg 748

                                                                        
Query: 579  ttctaccacctctgcatatggctatccatagcccttatggggttcctcctatgatggggg 638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  ttctaccacctctgcatatggctatccatagcccttatggggttcctcctatgatggggg 808

                                                                        
Query: 639  ctacacactcttcatcatctactgcatcatcactatctatttcttctatggcgacaggat 698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809  ctacacactcttcatcatctactgcatcatcactatctatttcttctatggcgacaggat 868

                                                                        
Query: 699  cgtcacccttgttaccattagttcttccacctcctacagcatcagccgaactacaagcca 758
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  cgtcacccttgttaccattagttcttccacctcctacagcatcagccgaactacaagcca 928

                                                                        
Query: 759  aaagatcattagataggttcttattcacaggaccagaccataatcaagttcaaacccaga 818
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  aaagatcattagataggttcttattcacaggaccagaccataatcaagttcaaacccaga 988

                                                   
Query: 819  ctcaaattcattacccaagtcaaggtcattacttcattg 857
            ||||||||||| |||||||||||||||||||||||||||
Sbjct: 989  ctcaaattcataacccaagtcaaggtcattacttcattg 1027


>3x_Contig139 
          Length = 903

 Score =  234 bits (118), Expect = 2e-61
 Identities = 118/118 (100%)
 Strand = Plus / Minus

                                                                       
Query: 87  ttaatccggccggagacactttacattaacgtgagtaaagtctaacagagagaaagagaa 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ttaatccggccggagacactttacattaacgtgagtaaagtctaacagagagaaagagaa 59

                                                                     
Query: 147 tagtcttctatagaacagctttacagtacatggttctacccagggtcttgaaaactta 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  tagtcttctatagaacagctttacagtacatggttctacccagggtcttgaaaactta 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5839
Number of Sequences: 1807
Number of extensions: 5839
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 857
length of database: 10,358,551
effective HSP length: 16
effective length of query: 841
effective length of database: 10,329,639
effective search space: 8687226399
effective search space used: 8687226399
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)