BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZC10RM1.SCF screened BAC_end
(856 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1343 1515 0.0
>3x_Contig1343
Length = 6877
Score = 1515 bits (764), Expect = 0.0
Identities = 794/805 (98%)
Strand = Plus / Minus
Query: 51 ttatgctaatcgggggatattggactagcaccgccaattaaggatgccaggtaagacagc 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5543 ttatgctaatcgggggatattggactagcaccgccaattaaggatgccaggtaagacagc 5484
Query: 111 ggactcttgaagttctcgaaattttctttcacgagcgagaatcacctattgtctcaaatt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5483 ggactcttgaagttctcgaaattttctttcacgagcgagaatcacctattgtctcaaatt 5424
Query: 171 atgcatatcattattatagtatatatgttgttcttttgagttacattattttacattatt 230
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5423 atgcatatcattattatagtatatatgttgttcttttgagttacattaagttacattatt 5364
Query: 231 ttcaccactagtgatcgattgaattagaatggagggatgagtagtgggtaaacgagtgaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5363 ttcaccactagtgatcgattgaattagaatggagggatgagtagtgggtaaacgagtgaa 5304
Query: 291 aaacctatcaaagaaggttcaattacaatagtagacttgaaacgaacagtagtgctgaca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5303 aaacctatcaaagaaggttcaattacaatagtagacttgaaacgaacagtagtgctgaca 5244
Query: 351 tggcaaatcttggtctccagtgatggcctgcatttcctgattgtgtagcagaaagccctg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5243 tggcaaatcttggtctccagtgatggcctgcatttcctgattgtgtagcagaaagccctg 5184
Query: 411 tggaagacgaattagtggtagcggtaggttcttgggtagttgtgttttggtttatttctc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5183 tggaagacgaattagtggtagcggtaggttcttgggtagttgtgttttggtttatttctc 5124
Query: 471 ctgttgctgcgataggcgacgacgaatctgttattagagaagaaggaagaagtagtgagg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5123 ctgttgctgcgataggcgacgacgaatctgttattagagaagaaggaagaagtagtgagg 5064
Query: 531 cagttcccgctgaaatttctattccactttcttgagctgtccctactgtaggtgtagaca 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063 cagttcccgctgaaatttctattccactttcttgagctgtccctactgtaggtgtagaca 5004
Query: 591 caacaaacgtggatgcactaacgttaatgatctgtgatacatccaacgataggatagatg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5003 caacaaacgtggatgcactaacgttaatgatctgtgatacatccaacgataggatagatg 4944
Query: 651 ttccacctaaaacatctcctccgttggaaaatgcgtagctgacactagcggtctgtactt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 ttccacctaaaacatctcctccgttggaaaatgcgtagctgacactagcggtctgtactt 4884
Query: 711 caccatctaccttgattatattttgtacggacatgangttatntggatatttttgatgtt 770
||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct: 4883 caccatctaccttgattatatttgtaacggacatgaggttatttggatatttttgatgtt 4824
Query: 771 attcttattgctatgatatggctngaaatatgctaatgagacaatttttgtgatgcctct 830
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 4823 attcttattgctatgatatggctgaaataatgctaatgagacaatttttgtgatgcctct 4764
Query: 831 gtgtcgttcgattgggcttgcgtgt 855
|||||||||||||||||||||||||
Sbjct: 4763 gtgtcgttcgattgggcttgcgtgt 4739
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5488
Number of Sequences: 1807
Number of extensions: 5488
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 856
length of database: 10,358,551
effective HSP length: 16
effective length of query: 840
effective length of database: 10,329,639
effective search space: 8676896760
effective search space used: 8676896760
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)