BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZC12FM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1553                                                        1626   0.0  

>3x_Contig1553 
          Length = 8593

 Score = 1626 bits (820), Expect = 0.0
 Identities = 848/859 (98%)
 Strand = Plus / Plus

                                                                        
Query: 88   gatatgaactggatggtccgtacatgtctaaaaggctatatcaggagtgttaaatatgaa 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2510 gatatgaactggatggtccgtacatgtctaaaaggctatatcaggagtgttaaatatgaa 2569

                                                                        
Query: 148  tcacaattttatcaatatttattgttcataggaggagtttctcgaattattttatgtacg 207
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2570 tcacaattttatcaatatttattgttcagaggaggagtttctcgaattattttatgtacg 2629

                                                                        
Query: 208  tagatatataancttttnatttgttttgcatttggttctatgtaataacgcattttttat 267
            ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2630 tagatatataatctatttatttgttttgcatttggttctatgtaataacgcattttttat 2689

                                                                        
Query: 268  cggttggatcaataaattctggcacttctctcttctgcaacatatggatgctctttgtaa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2690 cggttggatcaataaattctggcacttctctcttctgcaacatatggatgctctttgtaa 2749

                                                                        
Query: 328  tacttcgcgatgtcaataaaggtttgttttaaacgatccaaaccttcttggtcgatattc 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2750 tacttcgcgatgtcaataaaggtttgttttaaacgatccaaaccttcttggtcgatattc 2809

                                                                        
Query: 388  tggtaatggaatgctagtctgccatcccataatctaacattattcttttccgcaaattcc 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2810 tggtaatggaatgctagtctgccatcccataatctaacattattcttttccgcaaattcc 2869

                                                                        
Query: 448  aacaagagcttcaatgatatttttgacttagctaaatccacaaatataaaatttgtctca 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2870 aacaagagcttcaatgatatttttgacttagctaaatccacaaatataaaatttgtctca 2929

                                                                        
Query: 508  acaggatgttgtaagaccaattcaaactgatactggtcctttagtgtatggaataaatct 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2930 acaggatgttgtaagaccaattcaaactgatactggtcctttagtgtatggaataaatct 2989

                                                                        
Query: 568  gtccaaaacctgctggtagccttgttaacttcaacaatcctgttcgggaagttgagatca 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2990 gtccaaaacctgctggtagccttgttaacttcaacaatcctgttcgggaagttgagatca 3049

                                                                        
Query: 628  atacagtaattagcaatcttagtgataaacccggcttgtcttataccgccaccttgttgt 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3050 atacagtaattagcaatcttagtgataaacccggcttgtcttataccgccaccttgttgt 3109

                                                                        
Query: 688  ttctgtatgtgcctagctntcttgatgaattgagacgaccccactaacactgaaccaatt 747
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3110 ttctgtatgtgcctagctttcttgatgaattgagacgaccccactaacactgaaccaatt 3169

                                                                        
Query: 748  ggtgctccgatggacttagaaagacagatcgagactgagtccactaattttgacactttt 807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3170 ggtgctccgatggacttagaaagacagatcgagactgagtccactaattttgacactttt 3229

                                                                        
Query: 808  tgcatgtattctatntcagtctcaaactcccgagaggaaatattagcggcggcggtggcg 867
            |||||||||||||| |||||||||||||||  ||||||| ||||||||||||||||||||
Sbjct: 3230 tgcatgtattctatttcagtctcaaactccgaagaggaattattagcggcggcggtggcg 3289

                                                                        
Query: 868  gcngcagcattccacaatcttgctccatcgagatgaaatttaatgtcttgggaatgagcc 927
            || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3290 gcggcagcattccacaatcttgctccatcgagatgaattttaatgtcttgggaatgagcc 3349

                               
Query: 928  cagtcgctgattctttgaa 946
            |||||||||||||||||||
Sbjct: 3350 cagtcgctgattctttgaa 3368


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6231
Number of Sequences: 1807
Number of extensions: 6231
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)