BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD02FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1247 0.0
>3x_Contig1640
Length = 15521
Score = 1247 bits (629), Expect = 0.0
Identities = 730/756 (96%), Gaps = 7/756 (0%)
Strand = Plus / Plus
Query: 87 atgatggataaggatattagagaagctatgcagaaattcaaatcagagatggacaaatct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2026 atgatggataaggatattagagaagctatgcagaaattcaaatcagagatggacaaatct 2085
Query: 147 ggcataaatttgggtcctgaccaactagggcctttgatgaaagttctaggaatcgaaaag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2086 ggcataaatttgggtcctgaccaactagggcctttgatgaaagttctaggaatcgaaaag 2145
Query: 207 aagtaatattgttttttgacttcctgcatctcacttcctgattattcactggaagaatca 266
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2146 aagtaatattgttcaatgacttcctgcatctcacttcctgattattcactggaagaatca 2205
Query: 267 tcaggcatgttgataatagactgtctgtttgtatactttatgtcaatagatatctatact 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 tcaggcatgttgataatagactgtctgtttgtatactttatgtcaatagatatctatact 2265
Query: 327 atacttttacaacaaatatgtatattttatgaaattatttcattgcaggattgattggct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 atacttttacaacaaatatgtatattttatgaaattatttcattgcaggattgattggct 2325
Query: 387 tggggttgtgatatattgaatgtaagtggaaatataccttgcactttggacatgattctt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 tggggttgtgatatattgaatgtaagtggaaatataccttgcactttggacatgattctt 2385
Query: 447 agtttaatgaaatatcctttttttatttggccaagtaagataataaatccacctttgtga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2386 agtttaatgaaatatcctttttttatttggccaagtaagataataaatccacctttgtga 2445
Query: 507 caatatggactgggttcagaccctcagtaatgatagctgctgagttcttttcaaagaaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2446 caatatggactgggttcagaccctcagtaatgatagctgctgagttcttttcaaagaaag 2505
Query: 567 agttcaactcatacaaagttgtattgacatcgaaacgaacaaatatcttcttatgagact 626
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2506 agttcaactcagacaaagttgtattgacatcgaaacgaacaaatatcttcttatgagact 2565
Query: 627 tgtcggcgttattcgaagagatgtcatcaaagttattcaacttacggaaatcaaagaaca 686
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2566 tgtcggcgttataggaagagatgtcatcaaagttattcaacttacggaaatcaaagaaca 2625
Query: 687 gacttttaatgctagaaacatcctttggatgtggattatttttttttattaattgagaca 746
||||||||||||||||||||||| ||||| |||||| | ||| |||| |||||||||||
Sbjct: 2626 gacttttaatgctagaaacatcc-ttggaagtggataa--tttctttaataattgagaca 2682
Query: 747 aagttaccataccgtacaactttttcttcctttgttaacacaggttagttgatcgaacta 806
||||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||||| |
Sbjct: 2683 aagttaccaaaccgcacaac-tttccatcctttgttaacacagg-tagttgatcgaacga 2740
Query: 807 ttttttttcttaaaattttgatgacatgtagcaaca 842
|| | ||||||||| ||||||||| |||||||||
Sbjct: 2741 -gttatctcttaaaatcttgatgaca-gtagcaaca 2774
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,790
Number of Sequences: 1807
Number of extensions: 10790
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)