BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD03RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1127 739 0.0
3x_Contig307 638 0.0
>3x_Contig1127
Length = 4949
Score = 739 bits (373), Expect = 0.0
Identities = 396/403 (98%), Gaps = 1/403 (0%)
Strand = Plus / Minus
Query: 44 cttattccaaatgctaaccatttttatggcttcactccaacaatatcacattatcttgac 103
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 403 cttattccaaatgctaaccatttgaatggcttcactccaacaatatcacattatcttgac 344
Query: 104 gaaccaaaaggaaataatttcgttatctggccggcatgtctctgttttgtacaaacagca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gaaccaaaaggaaataatttcgttatctggccggcatgtctctgttttgtacaaacagca 284
Query: 164 tctgacgttcaaactcctcaatatactgcattttcaagatccccgcagcttgantt-gan 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 283 tctgacgttcaaactcctcaatatactgcattttcaagatccccgcagcttgagttagat 224
Query: 223 gattgtttcgatatgatagatggatttatacagttaaaactcacttcggcctacagaacg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gattgtttcgatatgatagatggatttatacagttaaaactcacttcggcctacagaacg 164
Query: 283 cctggaacatctgcagggatgggaactgtaaccggacataacccattaagtacgggagga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 cctggaacatctgcagggatgggaactgtaaccggacataacccattaagtacgggagga 104
Query: 343 atatttactgatcagtttcaagggtttaataagcattcggccaataacagcaataacgta 402
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 103 atatttactgatcagtttcaagggtttaataagcattcggccaataacagcattaacgta 44
Query: 403 tcttcaacgggagagaatggtaagttttctccggaatactcta 445
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 43 tcttcaacgggagagaatggtatgttttctccggaatactcta 1
>3x_Contig307
Length = 1772
Score = 638 bits (322), Expect = 0.0
Identities = 338/342 (98%), Gaps = 1/342 (0%)
Strand = Plus / Plus
Query: 569 ttgatgatattataacagaaactccttccgtaaaacctcagaacgatctttggaatgaga 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgatgatattataacagaaactccttccgtaaaacctcagaacgatctttggaatgaga 60
Query: 629 aaaaggatgtaataaatagtacatccaatatcaactcaaaggacgcatcagtaggtagtt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaggatgtaataaatagtacatccaatatcaactcaaaggacgcatcagtaggtagtt 120
Query: 689 ctgagcgtaaagtagaactggaaaccgcttttgaatctcccgctcagaatatttcgatag 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgagcgtaaagtagaactggaaaccgcttttgaatctcccgctcagaatatttcgatag 180
Query: 749 aggaacacgagcatgtagaattcgacaaagatctttttggtgaagatagcgacgaagatg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggaacacgagcatgtagaattcgacaaagatctttttggtgaagatagcgacgaagatg 240
Query: 809 tcagtacgcgaaataagaacgaagaactggtatctgtaaaagagattactgacgaatagt 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 241 tcagtacgcgaaataagaacgaagaactggtatctgtaaaagagattactgacgaaatgt 300
Query: 869 ttgatctatccgaaga-gacgatgaggctgacggatcaacta 909
|||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 301 ttgatctagccgaagatgacgatgaggctgacggatcaacta 342
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6345
Number of Sequences: 1807
Number of extensions: 6345
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)