BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD05FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1425 1570 0.0
>3x_Contig1425
Length = 7919
Score = 1570 bits (792), Expect = 0.0
Identities = 841/851 (98%), Gaps = 5/851 (0%)
Strand = Plus / Minus
Query: 90 catttgcgttggggaattgattgttgagtttgtcggaaatttggtattttccggtatatc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7342 catttgcgttggggaattgattgttgagtttgtcggaaatttggtattttccggtatatc 7283
Query: 150 ctgtaagtgactgttagatggtggtggtgaatctgcagtaggcatttcaaatcctgcctt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7282 ctgtaagtgactgttagatggtggtggtgaatctgcagtaggcatttcaaatcctgcctt 7223
Query: 210 agaatctgcatgtgagatgtgattaaatccaaatgggacagaaatttttaacttaggagg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7222 agaatctgcatgtgagatgtgattaaatccaaatgggacagaaatttttaacttaggagg 7163
Query: 270 ttcttctttacttgatttattttgaaacagttttaagaggctgttcttcttcttcttgaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7162 ttcttctttacttgatttattttgaaacagttttaagaggctgttcttcttcttcttgaa 7103
Query: 330 agatttctttccagattgtttatcatacgcatttggcggcaatggaggaagattaatgtt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7102 agatttctttccagattgtttatcatacgcatttggcggcaatggaggaagattaatgtt 7043
Query: 390 tttcctattacttaagacaggtttatcactattgatcattacaacgcccaattcatcatc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7042 tttcctattacttaagacaggtttatcactattgatcattacaacgcccaattcatcatc 6983
Query: 450 atcgtcagaatccagaagctggtgagcttgtaaaccatataatttttctgtttcatcgtc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6982 atcgtcagaatccagaagctggtgagcttgtaaaccatataatttttctgtttcatcgtc 6923
Query: 510 ttcatcgagccagatcgacttgatctgaggtacgttcatcataagtattggcccagatct 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6922 ttcatcgagccagatcgacttgatctgaggtacgttcatcataagtattggcccagatct 6863
Query: 570 gttggttgttttattcggcaatgcctggtttctgatgattcaaatcatggcctttgtacc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6862 gttggttgttttattcggcaatgcctggtttctgatgattcaaatcatggcctttgtacc 6803
Query: 630 ctggatcatgtttatccgtttatatatacatatatcggccgcgtccacagtggtaatgtt 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6802 ctggatcatgtttatccgtttatatatacatatatcggccgcgtccacagtggtaatgtt 6743
Query: 690 tcatgcattcctaggtttcacaattttctgacatttttcgcatctatggttaactactac 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6742 tcatgcattcctaggtttcacaattttctgacatttttcgcatctatggttaactactac 6683
Query: 750 tggattcagntaatttaggaattcctatattatgtaaaaacacgatttttcatttttcgc 809
||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 6682 tggattcagttaatttaggaattcctatattaggtaaaaacacgatttttca-ttttcgc 6624
Query: 810 accctcttcaggaatgcagatacgttttcgttgatcgaaaattaatgtttttctaacctc 869
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 6623 accctcttcaggaatgcagatacg-tttcgttgatcgaaaattaatg-ttttctaacctc 6566
Query: 870 tctaattcaccatcgcccatccggtttttttcttttttcttggggttcatgttctccttt 929
||||||||||||||||| |||||| ||||||||||||||||||| |||||| ||| ||||
Sbjct: 6565 tctaattcaccatcgccaatccgg-ttttttcttttttcttgggtttcatg-tcttcttt 6508
Query: 930 ttttcttttgg 940
|||||||||||
Sbjct: 6507 ttttcttttgg 6497
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,632
Number of Sequences: 1807
Number of extensions: 10632
Number of successful extensions: 159
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)