BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD05RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1352 1590 0.0
>3x_Contig1352
Length = 6660
Score = 1590 bits (802), Expect = 0.0
Identities = 880/900 (97%), Gaps = 5/900 (0%)
Strand = Plus / Plus
Query: 44 gctttaatttctctcc-tgcct-atatattggtggagactgttcgaattataagaagtgg 101
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1812 gctttaatttctctccatgcctcatatattggtggagactgttcgaattataagaagtgg 1871
Query: 102 tattttgccgcccaactagatttagatgaagagattggattcccttacatgaaacttcat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1872 tattttgccgcccaactagatttagatgaagagattggattcccttacatgaaacttcat 1931
Query: 162 ggtaaatcaaagaagagaaatgcaaagttcgcaagcgagaaaggtatttcaattttttta 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1932 ggtaaatcaaagaagagaaatgcaaagttcgcaagcgagaaaggtatttcaattaaag-a 1990
Query: 222 tcaacaacgactgtggaaacagaagcaggatgaatttttggagaattatcccaaaattat 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1991 gcaacaacgactgtggaaacagaagcaggatgaatttttggagaattatcccaaaattat 2050
Query: 282 aatgtcagaaaatgagaggaaaactggttcctcatataaagccgccgattacaaatggaa 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2051 aatgtcagaaaatgagaggaaaactggttcctcatataaagccgccgattacaaatggaa 2110
Query: 342 aatgaagatgaactctcttacttcatcacaaatgactagacagctagcgttatatttatt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2111 aatgaagatgaactctcttacttcatcacaaatgactagacagctagcgttatatttatt 2170
Query: 402 aatctggggagaagcaaaccaattgagatttacaccagaatgcctctgttttatatttaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2171 aatctggggagaagcaaaccaattgagatttacaccagaatgcctctgttttatatttaa 2230
Query: 462 gtgcgcattagattatgattctagcttgcaggacatcgaagattcatcccaagatgaatt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 gtgcgcattagattatgattctagcttgcaggacatcgaagattcatcccaagatgaatt 2290
Query: 522 tacttttctaaataatatcatcaccccgatttacaaattcatcagggatcaagtttatac 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2291 tacttttctaaataatatcatcaccccgatttacaaattcatcagggatcaagtttatac 2350
Query: 582 actagattcacagggcaaactaataagaagggaaaaggaccacaaggatattattgggta 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 actagattcacagggcaaactaataagaagggaaaaggaccacaaggatattattgggta 2410
Query: 642 cgatgatgtgaatcaattattttggtatcctgaaggaatcgaacggattgtcctanaatc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2411 cgatgatgtgaatcaattattttggtatcctgaaggaatcgaacggattgtcctaaaatc 2470
Query: 702 tggagcaagattggttgatacccctttagaaaatagatttcttctattgaaagacgtaaa 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2471 tggagcaagattggttgatacccctttagaaaatagatttcttctattgaaagacgtaaa 2530
Query: 762 ctgggatgtcgttttctataagacatactatgangacaggacatggctacactcaatgac 821
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2531 ctgggatgtcgttttctataagacatactatgagacaaggacatggctacactcaatgac 2590
Query: 822 aaatttcaacaggatttggatcattcattttgcaacgtttntgtttctttacttcgttca 881
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 2591 aaatttcaacaggatttggatcattcattttgcaacgttt-tggttctttacttcgttca 2649
Query: 882 atgcacccacgttatacaggcaaaattacattcagacattggatacccca-caacacctc 940
||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct: 2650 atgcaccaacgttatacagcaaaaattacattcagacattggataacccaccaacacctc 2709
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8151
Number of Sequences: 1807
Number of extensions: 8151
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)