BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD06FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1709 1554 0.0
>3x_Contig1709
Length = 16948
Score = 1554 bits (784), Expect = 0.0
Identities = 805/810 (99%), Gaps = 2/810 (0%)
Strand = Plus / Minus
Query: 86 cagcagccaagaatttccagttggactcagggtcattaggatcgacaaagcctgttggat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8820 cagcagccaagaatttccagttggactcagggtcattaggatcgacaaagcctgttggat 8761
Query: 146 gaacctgaatttggtccatatcaattaatttagcacctagcctttctagtaaaacctgcc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8760 gaacctgaatttggtccatatcaattaatttagcacctagcctttctagtaaaacctgcc 8701
Query: 206 cttcacccaaagtctgatcaccgtttgtggttggtaaatcgactagatgtggggcatatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8700 cttcacccaaagtctgatcaccgtttgtggttggtaaatcgactagatgtggggcatatt 8641
Query: 266 tttccaacaacttcttgttgaaaccaaatccacctgtacagaacacgacattgtttgttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8640 tttccaacaacttcttgttgaaaccaaatccacctgtacagaacacgacattgtttgttt 8581
Query: 326 caatggaatgtgttccttctgaatcctcgtagactacaccatttaccttattattctcat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8580 caatggaatgtgttccttctgaatcctcgtagactacaccatttaccttattattctcat 8521
Query: 386 caagtttgacatcaattaccttgctattcaattggatcttgacgagatctgcgccatacg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8520 caagtttgacatcaattaccttgctattcaattggatcttgacgagatctgcgccatacg 8461
Query: 446 attgtaacgattttttcaaagtgtctacaatctggaaaccgggtggcagtttcccgctag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8460 attgtaacgattttttcaaagtgtctacaatctggaaaccgggtggcagtttcccgctag 8401
Query: 506 atctatgggttcttgaaaccgaatgaccacccaattgggcaagtttatccaacggaatct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8400 atctatgggttcttgaaaccgaatgaccacccaattgggcaagtttatccaacggaatct 8341
Query: 566 gatgctcagtttgtagccaagaaatagcattcgctgaatctttggccaacttctccatca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8340 gatgctcagtttgtagccaagaaatagcattcgctgaatctttggccaacttctccatca 8281
Query: 626 atgtcacaatacctttccctctagcagatttgatcgtatcatctgcaaataactccggat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8280 atgtcacaatacctttccctctagcagatttgatcgtatcatctgcaaataactccggat 8221
Query: 686 tatcaattatcttaagtttttcttgagtgtcggtaccagcaccattaataccgcttgacg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8220 tatcaattatcttaagtttttcttgagtgtcggtaccagcaccattaataccgcttgacg 8161
Query: 746 ccttgatcgaattaccaccaatgctttctgtcttttccaatanaactattggaatattaa 805
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 8160 ccttgatcgaattaccaccaatgcttcctgtcttttccaataaaactattggaatattaa 8101
Query: 806 acttcactagttgggtagaggtcgntaatccagctaatcctgatcctat-actacaac-g 863
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
Sbjct: 8100 acttcactagttgggtagaggtcgttaatccagctaatcctgatcctataactacaacgg 8041
Query: 864 gtttagacatggttgcttgattctttgaaa 893
||||||||||||||||||||||||||||||
Sbjct: 8040 gtttagacatggttgcttgattctttgaaa 8011
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6365
Number of Sequences: 1807
Number of extensions: 6365
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)