BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD06RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1539 1685 0.0
>3x_Contig1539
Length = 11016
Score = 1685 bits (850), Expect = 0.0
Identities = 891/900 (99%), Gaps = 4/900 (0%)
Strand = Plus / Minus
Query: 44 ctttatgaatcacagcttgacaaactacaatcacagatagattctttggatcaacaactt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8581 ctttatgaatcacagcttgacaaactacaatcacagatagattctttggatcaacaactt 8522
Query: 104 tactcgatagaaaatgctaatttgaatttggaaactttgaaggcaatgaaacaaggtgca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8521 tactcgatagaaaatgctaatttgaatttggaaactttgaaggcaatgaaacaaggtgca 8462
Query: 164 tctgcaatgaaaaatatccataaggggctagatctagataaagtggatgatactatttat 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8461 tctgcaatgaaaaatatccataaggggctagatctagataaagtggatgatactatggat 8402
Query: 224 gaaatcagagaacaagttgaactaaaccaagaaatcagcgaggctatttctaaaccgttg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8401 gaaatcagagaacaagttgaactaaaccaagaaatcagcgaggctatttctaaaccgttg 8342
Query: 284 atattacaagatgagttggacgaggacgaattagaccaggagttggaactgctagaatcg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8341 atattacaagatgagttggacgaggacgaattagaccaggagttggaactgctagaatcg 8282
Query: 344 gaaaacttgcaaaaggaacacattgcccctgtacctcagcaacaaatacaacaaccttca 403
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8281 gaaa-cttgcaaaaggaacacattgcccctgtacctcagcaacaaatacaacaaccttca 8223
Query: 404 atagacttaccgtctgtacccgacgtcaaattatctactccagaacttaatagtgcccaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8222 atagacttaccgtctgtacccgacgtcaaattatctactccagaacttaatagtgcccaa 8163
Query: 464 gcagatgaggaagacgaagaagaggatgaagatgaacgtgcattaagagaactacaagct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8162 gcagatgaggaagacgaagaagaggatgaagatgaacgtgcattaagagaactacaagct 8103
Query: 524 gaaatgggattgtagaaaaaacaaaaaatgtgcatatgttatacgttttatctttctctc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8102 gaaatgggattgtagaaaaaacaaaaaatgtgcatatgttatacgttttatctttctctc 8043
Query: 584 ccttaatttccctattaccatatattgaatgtcatttaaccttacctttccggtgaatag 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8042 ccttaatttccctattaccatatattgaatgtcatttaaccttacctttccggtgaatag 7983
Query: 644 ttttaaatgtgtatgatatagagtatctatataatattactactaactgtgattaatcta 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7982 ttttaaatgtgtatgatatagagtatctatataatattactactaactgtgattaatcta 7923
Query: 704 tttcaaagacgaataatgataatcgttctagtattcagtttactaaaacccattacaaga 763
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7922 tttcaaagacgaataatgataatcgttctagtattcagtttactaaaacccataacaaga 7863
Query: 764 aaaatacaaatataatcgcaaatattttcacagccatccatctattattactgatattat 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7862 aaaatacaaatataatcgcaaatattttcacagccatccatctattattactgatattat 7803
Query: 824 caaaatattttagtaattctctctgcgctccatgaatattcatctcaatgtctcctacat 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7802 caaaatattttagtaattctctctgcgctccatgaatattcatctcaatgtctcctacat 7743
Query: 884 tatcgtcaattctttgaatcgnttctccttggtncttgta-catatgagcccaattgttg 942
||||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||||
Sbjct: 7742 tatcgtcaattctttgaatcgtttctcctt-gttcttgtaccatatgag-ccaattgttg 7685
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9377
Number of Sequences: 1807
Number of extensions: 9377
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)