BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZD07FM1.SCF screened BAC_end
         (916 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig955                                                         1586   0.0  

>3x_Contig955 
          Length = 4159

 Score = 1586 bits (800), Expect = 0.0
 Identities = 828/832 (99%), Gaps = 4/832 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   tacttggaactaataactaatggaaaaattgtttggaggaacaaattagaagctattgat 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3340 tacttggaactaataactaatggaaaaattgtttggaggaacaaattagaagctattgat 3281

                                                                        
Query: 147  atgaatctaagtacagaaaatggttatgtgtggacgctcgagatcttcggacctgaggac 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3280 atgaatctaagtacagaaaatggttatgtgtggacgctcgagatcttcggacctgaggac 3221

                                                                        
Query: 207  ttcggcatttatttcaaaagctgcatttcttgttattattcagtctccgacgaaaatatg 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3220 ttcggcatttatttcaaaagctgcatttcttgttattattcagtctccgacgaaaatatg 3161

                                                                        
Query: 267  caagctctcaattgtgcaactcttcagaactttattgatgtctattacttaccgagtttt 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 caagctctcaattgtgcaactcttcagaactttattgatgtctattacttaccgagtttt 3101

                                                                        
Query: 327  tttacacaaccaagtactttagaaagaaacatcaaaatttcaatacaacctgattttcca 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 tttacacaaccaagtactttagaaagaaacatcaaaatttcaatacaacctgattttcca 3041

                                                                        
Query: 387  gtctcaccgaatgtcacccttcttttagaggacggtaagagtgttctggcctactcattt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 gtctcaccgaatgtcacccttcttttagaggacggtaagagtgttctggcctactcattt 2981

                                                                        
Query: 447  attttacaggcccattctatgtatttcagaagacttttctctcaaacctggtcagctaat 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 attttacaggcccattctatgtatttcagaagacttttctctcaaacctggtcagctaat 2921

                                                                        
Query: 507  ttcagcgatcataaagtggactggacagatctctcttatgatatctgcagaagcattctt 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 ttcagcgatcataaagtggactggacagatctctcttatgatatctgcagaagcattctt 2861

                                                                        
Query: 567  gattgcatctataatatatcctgtcaaaagaaatctactcaggtacttgataaaattgca 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 gattgcatctataatatatcctgtcaaaagaaatctactcaggtacttgataaaattgca 2801

                                                                        
Query: 627  ttcaatatgggacatcaaaggtatcacgataggttattgcacatgcttgaaatatcagat 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 ttcaatatgggacatcaaaggtatcacgataggttattgcacatgcttgaaatatcagat 2741

                                                                        
Query: 687  aaatttatgcttttgacgttagtccaacatatagaaagccagttgatatcatcagttaat 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 aaatttatgcttttgacgttagtccaacatatagaaagccagttgatatcatcagttaat 2681

                                                                        
Query: 747  tcaaacaatggttattgc-ttctggattgcagctagcgaccttaatttaccggatttagc 805
            ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 tcaaacaat-gttattgctttctggattgcagctagcgaccttaatttaccggatttagc 2622

                                                                        
Query: 806  cgccaactgtcaggagtatatcttcaggaatccttctgtcttatttagctctgacaccgt 865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2621 cgccaactgtcaggagtatatcttcaggaatccttctgtcttatttagctctgacaccgt 2562

                                                                
Query: 866  agagcatattcatgc-aaacatcacatcagaaatgtggaaatccattgagca 916
            |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2561 agagcata-tcatgcaaaacatcacatcagaaatgtggaaatccattgagca 2511


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6555
Number of Sequences: 1807
Number of extensions: 6555
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)