BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD07RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1602 0.0
>3x_Contig1577
Length = 10627
Score = 1602 bits (808), Expect = 0.0
Identities = 869/880 (98%), Gaps = 7/880 (0%)
Strand = Plus / Plus
Query: 43 gcttgaagctgaagtggaagctgtaagtattcaaaacaacgttgctgatgattcagtctt 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8279 gcttgaagctgaagtggaagctgaaagtattcaaaacaacgttgctgatgattcagtctt 8338
Query: 103 ggacacctcagaagttgatctatctcaacctgaaaagaaacacgggcttttggggaaatt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8339 ggacacctcagaagttgatctatctcaacctgaaaagaaacacgggcttttggggaaatt 8398
Query: 163 taaacagaacctgacaatatcgtctaccctcaacccaatagcgacgaaaacctctatctt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 8399 taaacagaacctgacaatatcgtctaccctcaacccaatagcgacgaaaacctcaa-caa 8457
Query: 223 acaacaattctgatactatttcaatggtatctgcagaaacacaagcatccaagaagtcga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8458 acaacaattctgatactatttcaatggtatctgcagaaacacaagcatccaagaagtcga 8517
Query: 283 atagattctcaattttcaagaaagttggtcgctcaaagcgaactgaatcgaccccattcg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8518 atagattctcaattttcaagaaagttggtcgctcaaagcgaactgaatcgaccccattcg 8577
Query: 343 atgatgactccgtatcagttgttccctccaatgcagaaagtttcacaccatctcaagagg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8578 atgatgactccgtatcagttgttccctccaatgcagaaagtttcacaccatctcaagagg 8637
Query: 403 tgtcatacaacaatgatgacactgtgaaaaacactcctactggaattagagccaaagtac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8638 tgtcatacaacaatgatgacactgtgaaaaacactcctactggaattagagccaaagtac 8697
Query: 463 tctatagttatacgaaaagtgatgctgatgaagtatctgtcaatggagacactgtcgtta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8698 tctatagttatacgaaaagtgatgctgatgaagtatctgtcaatggagacactgtcgtta 8757
Query: 523 ctgtcttaaacaaagatgccggtaacggatggtcattaattaagttggatacaggcgaac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8758 ctgtcttaaacaaagatgccggtaacggatggtcattaattaagttggatacaggcgaac 8817
Query: 583 agggcctggttcctgaaacctatattcagttacaacaaagtaccactccatcaactagtc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8818 agggcctggttcctgaaacctatattcagttacaacaaagtaccactccatcaactagtc 8877
Query: 643 gtgcaccaccaccaagggctccacaacctagaaagagtgctcaaaagactatgaccgcag 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8878 gtgcaccaccaccaagggctccacaacctagaaagagtgctcaaaagactatgaccgcag 8937
Query: 703 cctatccataccagtctcagggtccagatgaactttccttacaggtttggagataagatc 762
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8938 cctatccataccagtctcagggtccagatgaactttccttacagg-ttggagataagatc 8996
Query: 763 aaggtattaaaggaagaatgaa-gaaacggctggacgtttggtgagctaaacgggacaca 821
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8997 aaggtattaaaggaag-atgaaggaaacggctggacgtttggtgagctaaacgggacaca 9055
Query: 822 gggcttgttccccaccacttactgctcctaatccttat-aatagctcttgtgtatgaaaa 880
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 9056 gggcttgttccccaccacttactgctcctaatccttataaatagctcttgtgtatgaaaa 9115
Query: 881 tttacgtttatattttccaattttcccattatcattattt 920
|||||||||||| ||||||| |||||||||||||||||||
Sbjct: 9116 tttacgtttata-tttccaa-tttcccattatcattattt 9153
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6323
Number of Sequences: 1807
Number of extensions: 6323
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)