BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD08FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1659 0.0
>3x_Contig1789
Length = 30977
Score = 1659 bits (837), Expect = 0.0
Identities = 847/849 (99%), Gaps = 1/849 (0%)
Strand = Plus / Plus
Query: 85 taccctgtcctctatcataattatcatatatataattacaacttaacccttttcatttaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9984 taccctgtcctctatcataattatcatatatataattacaacttaacccttttcatttaa 10043
Query: 145 gaacccggtcttaatactatcaactccatgcagctaattttcgttattatcccaaaattt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10044 gaacccggtcttaatactatcaactccatgcagctaattttcgttattatcccaaaattt 10103
Query: 205 aagctggatatatcaatctctgggcaattacaaaactccgtcggttaggaaccagatact 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10104 aagctggatatatcaatctctgggcaattacaaaactccgtcggttaggaaccagatact 10163
Query: 265 tcgttgtcaattgcttcccacattatagcatacctatataaagtaacacctgataatggc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10164 tcgttgtcaattgcttcccacattatagcatacctatataaagtaacacctgataatggc 10223
Query: 325 aataaaatataacaaagcaccataagttgaggcctaacgaggttaagaaaaaaatttcta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10224 aataaaatataacaaagcaccataagttgaggcctaacgaggttaagaaaaaaatttcta 10283
Query: 385 tgtaataatatacacatgttttggcaacaatatatctataacatatatatgtctgtgctt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10284 tgtaataatatacacatgttttggcaacaatatatctataacatatatatgtctgtgctt 10343
Query: 445 gtgtttgtgcttgcgctttctgattgaataattgagaaggtgcagggtattgaaaagatt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10344 gtgtttgtgcttgcgctttctgattgaataattgagaaggtgcagggtattgaaaagatt 10403
Query: 505 gaaagattcattcaactactcttgtccaaatccgatggtttcttccactgctaatgttag 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10404 gaaagattcattcaactactcttgtccaaatccgatggtttcttccactgctaatgttag 10463
Query: 565 cttctgcttgaaagattcataatcagtgtatggtggaagatccactctgttgaaacaagt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10464 cttctgcttgaaagattcataatcagtgtatggtggaagatccactctgttgaaacaagt 10523
Query: 625 gtgtgacttgggtagttgttgaacttcacctgctttttcgatagtgaatcttcttggacc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10524 gtgtgacttgggtagttgttgaacttcacctgctttttcgatagtgaatcttcttggacc 10583
Query: 685 atcagaaccttgcaaatctttgaatccattgaccgggatacgcgatgtaccagttgtgaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10584 atcagaaccttgcaaatctttgaatccattgaccgggatacgcgatgtaccagttgtgaa 10643
Query: 745 ttgtaacaaacgtgctctttgctcgttgtcccattcagtgatacatttccagaaccactg 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10644 ttgtaacaaacgtgctctttgctcgttgtcccattcagtgatacatttccagaaccactg 10703
Query: 805 gataacttcgtcagactcttggtatccacgataatcttgtgtgtttttttcagtcttcaa 864
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 10704 gataacttcgtcagactcttggtatccacgataatc-tgtgtgttttttccagtcttcaa 10762
Query: 865 catcaatttctgcaataccaccaatcaataattcaagttcacgttcatcaaacacgttga 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10763 catcaatttctgcaataccaccaatcaataattcaagttcacgttcatcaaacacgttga 10822
Query: 925 ctagatctt 933
|||||||||
Sbjct: 10823 ctagatctt 10831
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7553
Number of Sequences: 1807
Number of extensions: 7553
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)