BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD08RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1645 0.0
>3x_Contig1744
Length = 24119
Score = 1645 bits (830), Expect = 0.0
Identities = 879/892 (98%), Gaps = 3/892 (0%)
Strand = Plus / Plus
Query: 43 gctttgttgaaggaagacgcttattcctatccaccaggttgttaatttttctgaaaagta 102
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 13073 gctttgttgaaggaagacgcttaaacctatccaccaggttgttaatttttctgaaaagta 13132
Query: 103 aatatctcatttatcaatatctctttgtgtcttaagttgttaattcgcacatcgtgcaca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13133 aatatctcatttatcaatatctctttgtgtcttaagttgttaattcgcacatcgtgcaca 13192
Query: 163 taagcacacccatgactatcactttatttagtactcttttttaccaatattatt-ctttt 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 13193 taagcacacccatgactatcactttatttagtactcttttttaccaatattattacatct 13252
Query: 222 agttttagttttccaaaccgattaatattaatttgggtcttaattgaaagatgaaagagg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13253 agttttagttttccaaaccgattaatattaatttgggtcttaattgaaagatgaaagagg 13312
Query: 282 gagtcaagcaacatatgtgattgattgatttgtatggttcttcatgatgctgttgtactg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13313 gagtcaagcaacatatgtgattgattgatttgtatggttcttcatgatgctgttgtactg 13372
Query: 342 aattgcaacatataaactcaactatctttatatcttcatgtactttaatatttcactgaa 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13373 aattgcaacatataaactcaactatctttatatcttcatgtactttaatatttcactgaa 13432
Query: 402 ctaaattgaaataattcataattaaccggtatattttcttgcttacttgaattatttaca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13433 ctaaattgaaataattcataattaaccggtatattttcttgcttacttgaattatttaca 13492
Query: 462 cgattcatactgttcgtttaaataagccactccatccagcggagtgggttttaattatgt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13493 cgattcatactgttcgtttaaataagccactccatccagcggagtgggttttaattatgt 13552
Query: 522 agtttccttgctttgtgttataacccagctatcgaatatacgcctgtctgttgatatttt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13553 agtttccttgctttgtgttataacccagctatcgaatatacgcctgtctgttgatatttt 13612
Query: 582 atcaccgcatcgtgatacaatggcaaataatgaggtgaagtgatatcaaagtgacttttc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13613 atcaccgcatcgtgatacaatggcaaataatgaggtgaagtgatatcaaagtgacttttc 13672
Query: 642 gctattggaggaaacanaacatgtcttacatttgtgtatgcataacttgcgtaatctgtg 701
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13673 gctattggaggaaacaaaacatgtcttacatttgtgtatgcataacttgcgtaatctgtg 13732
Query: 702 tctttatacttgttatcacgaacgattatatccttctccgaaacatcaacccattctgtt 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13733 tctttatacttgttatcacgaacgattatatccttctccgaaacatcaacccattctgtt 13792
Query: 762 tgtactgaattcataactgtgaatctctagaaatttaggttgggcgtcgcaccagtaaat 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13793 tgtactgaattcataactgtgaatctctagaaatttaggttgggcgtcgcaccagtaaat 13852
Query: 822 atcatagcccagcttaatataaatcctgtgtgttgagcttgagataggagatgaagagct 881
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13853 atcatagcccagctaaatataaatcctgtgtgttgagcttgagataggagatgaagagct 13912
Query: 882 tttcttctt-tatcctngagcattc-tggatcatcatcgacttttcataagt 931
||||||||| |||||| |||||| || |||||||||||||||||||||||
Sbjct: 13913 tttcttcttctatcctgaggcattcttgaatcatcatcgacttttcataagt 13964
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7680
Number of Sequences: 1807
Number of extensions: 7680
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)