BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD09FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 1499 0.0
>3x_Contig1804
Length = 51183
Score = 1499 bits (756), Expect = 0.0
Identities = 824/840 (98%), Gaps = 5/840 (0%)
Strand = Plus / Plus
Query: 87 tctagtgactcctatttcgagtcattccagtacagcagtcatgatgagtttattcacaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24932 tctagtgactcctatttcgagtcattccagtacagcagtcatgatgagtttattcacaat 24991
Query: 147 tgggttatttcggaacttgaaatggaacacgttgatgaaaccatgtcaagagcattccca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24992 tgggttatttcggaacttgaaatggaacacgttgatgaaaccatgtcaagagcattccca 25051
Query: 207 ggattatggaaattggaatccccatatttagttccgggattctctaatgacttagcattg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25052 ggattatggaaattggaatccccatatttagttccgggattctctaatgacttagcattg 25111
Query: 267 gtattaggtagctctcaaacaagatcagcgattgcccataaattggatcatgagatttct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25112 gtattaggtagctctcaaacaagatcagcgattgcccataaattggatcatgagatttct 25171
Query: 327 gttaagaccaaggaaaagttagttgtgcaatacgaggttaaattacagaagatgcttgaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25172 gttaagaccaaggaaaagttagttgtgcaatacgaggttaaattacagaagatgcttgaa 25231
Query: 387 tgtggtggcgcatacatgaaattactaaaaaccaatgccgatgatctcagtcagtatgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25232 tgtggtggcgcatacatgaaattactaaaaaccaatgccgatgatctcagtcagtatgat 25291
Query: 447 cattcagccgatgactatgtcttagtatttggtcccgactcttgttcaatgtacactaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25292 cattcagccgatgactatgtcttagtatttggtcccgactcttgttcaatgtacactaat 25351
Query: 507 gaggtacatttcatcttgaagcgtgagaatccaatttccgaagaattcgaggacaagtac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25352 gaggtacatttcatcttgaagcgtgagaatccaatttccgaagaattcgaggacaagtac 25411
Query: 567 ttaacagaagcaccactttcaggattagaccaaccgattactcgtttatacaccttgata 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25412 ttaacagaagcaccactttcaggattagaccaaccgattactcgtttatacaccttgata 25471
Query: 627 ttagactctgcagatcagtcatttgaaattagaatcgatggagaagttgtcaaggcagga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25472 ttagactctgcagatcagtcatttgaaattagaatcgatggagaagttgtcaaggcagga 25531
Query: 687 aacttgcttgcggagggaacattcagacccagcctaaatccttcaagggaaattgaagat 746
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 25532 aacttgcttgcggagggaacattcagacccagcctaaatcctccaagggaaattgaagat 25591
Query: 747 cccttctgctagtcagccagcggattgtggcagcaggtctatgatccctgatcccactgc 806
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 25592 -ccttctgctagtcagccagcggattggggcagcaggtctatgatccctgatcccactgc 25650
Query: 807 cataaaaccggaagactgggatgtaaatgaacccaagtggatttcagaatccattgttta 866
||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||| |
Sbjct: 25651 cataaaaccggaagactgggatgaaaatgaacccaagtggattccag-atccaatgttca 25709
Query: 867 aaaaaccagtagaatggggatgacaagcttctctgaatacatttgaggatgaattgcgtt 926
||||||||| |||| |||||||| ||| |||||||||||| | |||||||||| |||||
Sbjct: 25710 aaaaaccagaggaat-gggatgac-agcatctctgaataca-tcgaggatgaatcgcgtt 25766
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5592
Number of Sequences: 1807
Number of extensions: 5592
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)