BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD09RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 1532 0.0
>3x_Contig1804
Length = 51183
Score = 1532 bits (773), Expect = 0.0
Identities = 880/908 (96%), Gaps = 7/908 (0%)
Strand = Plus / Minus
Query: 44 cttcaagtaatcaagatggttttttttatcaaccacattcttgtatggtgtctttttgct 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 26278 cttcaagtaatcaagatggttttctttatcaaccacattcttgtatggtgtctttttgct 26219
Query: 104 ggattcttccgaggtatctacttcattcacatcttcagaatgagctttttccatcacgac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26218 ggattcttccgaggtatctacttcattcacatcttcagaatgagctttttccatcacgac 26159
Query: 164 ttcaagttcctttttctccaagctcaactttggtaagaaagttgagttaccaaccttttc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 26158 ttcaagttcctttttctccaagctcaactttggtaagaaagttgagttaccaaccagctc 26099
Query: 224 tgcctcttctatagactttccaacgtagatattgtcgaatgatatatcgcttgcacttga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26098 tgcctcttctatagactttccaacgtagatattgtcgaatgatatatcgcttgcacttga 26039
Query: 284 ccaaatatcaaaggaaattgcagtaatagcatcaatgttcgctggtgttttatcctcata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26038 ccaaatatcaaaggaaattgcagtaatagcatcaatgttcgctggtgttttatcctcata 25979
Query: 344 ataattgggattcgctatgagaggcgccttccattcaccttgataattggggttagggat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25978 ataattgggattcgctatgagaggcgccttccattcaccttgataattggggttagggat 25919
Query: 404 catttcagccttccaagtacctctgtatttttcattttcaaccatctttggtctccactt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25918 catttcagccttccaagtacctctgtatttttcattttcaaccatctttggtctccactt 25859
Query: 464 tccacaaccttgtttcgtatagcacgaaggattaacaataaggggagcaatccatcttcc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25858 tccacaaccttgtttcgtatagcacgaaggattaacaataaggggagcaatccatcttcc 25799
Query: 524 atccaccttgtcattccaccaatctggtttagaacgcgattcatcctcgatgtattcaga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25798 atccaccttgtcattccaccaatctggtttagaacgcgattcatcctcgatgtattcaga 25739
Query: 584 gatgctgtcatcccattcctctggttttttgaacattggatctggaatccacttgggttc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25738 gatgctgtcatcccattcctctggttttttgaacattggatctggaatccacttgggttc 25679
Query: 644 attttcatcccagtcttccggttttatggcagtgggatcagggatcatagacctgctgcc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25678 attttcatcccagtcttccggttttatggcagtgggatcagggatcatagacctgctgcc 25619
Query: 704 ccaatccgctggctgactagcagaaggatcttcaatttcccttggaggatttangctggg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 25618 ccaatccgctggctgactagcagaaggatcttcaatttcccttggaggatttaggctggg 25559
Query: 764 tctgaaatgtt-cctccgcanagcagtttcctgcctttgac-acttctccatcgattctt 821
|||| |||||| |||||||| ||||||||||| ||||| |||||||||||||||| |
Sbjct: 25558 tctg-aatgttccctccgcaagcaagtttcctgcc-ttgacaacttctccatcgattc-t 25502
Query: 822 attttcanatgactgatctgcagagtctaatatccaagtgtattaacgagtnatcggttg 881
| ||||| |||||||||||||||||||||||||| | |||||| ||||||| ||||||||
Sbjct: 25501 aatttcaaatgactgatctgcagagtctaatatcaaggtgtataaacgagtaatcggttg 25442
Query: 882 gtctaatccctgaagtggtgctttctgntaagtacttgttctcggaattctccggaaatt 941
||||||||| ||||||||| ||||| ||||||||||| ||| ||||||| ||||||||
Sbjct: 25441 gtctaatcctgaaagtggtgc-ttctgttaagtacttgtcctc-gaattcttcggaaatt 25384
Query: 942 ggattctc 949
||||||||
Sbjct: 25383 ggattctc 25376
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6662
Number of Sequences: 1807
Number of extensions: 6662
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)