BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD11FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig955 1572 0.0
>3x_Contig955
Length = 4159
Score = 1572 bits (793), Expect = 0.0
Identities = 842/853 (98%), Gaps = 4/853 (0%)
Strand = Plus / Minus
Query: 85 tacttggaactaataactaatggaaaaattgtttggaggaacaaattagaagctattgat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3340 tacttggaactaataactaatggaaaaattgtttggaggaacaaattagaagctattgat 3281
Query: 145 atgaatctaagtacagaaaatggttatgtgtggacgctcgagatcttcggacctgaggac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3280 atgaatctaagtacagaaaatggttatgtgtggacgctcgagatcttcggacctgaggac 3221
Query: 205 ttcggcatttatttcataagctgcatttcttgttattattcagtctccgacgaaaatatg 264
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3220 ttcggcatttatttcaaaagctgcatttcttgttattattcagtctccgacgaaaatatg 3161
Query: 265 caagctctcaattgtgcaactcttcagaactttattgatgtctattacttaccgagtttt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 caagctctcaattgtgcaactcttcagaactttattgatgtctattacttaccgagtttt 3101
Query: 325 tttacacaaccaagtactttagaaagaaacatcaaaatttcaatacaacctgattttcca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 tttacacaaccaagtactttagaaagaaacatcaaaatttcaatacaacctgattttcca 3041
Query: 385 gtctcaccgaatgtcacccttcttttagaggacggtaagagtgttctggcctactcattt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 gtctcaccgaatgtcacccttcttttagaggacggtaagagtgttctggcctactcattt 2981
Query: 445 attttacaggcccattctatgtatttcagaagacttttctctcaaacctggtcagctaat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 attttacaggcccattctatgtatttcagaagacttttctctcaaacctggtcagctaat 2921
Query: 505 ttcagcgatcataaagtggactggacagatctctcttatgatatctgcagaagcattctt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 ttcagcgatcataaagtggactggacagatctctcttatgatatctgcagaagcattctt 2861
Query: 565 gattgcatctataatatatcctgtcaaaagaaatctactcaggtacttgataaaattgca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 gattgcatctataatatatcctgtcaaaagaaatctactcaggtacttgataaaattgca 2801
Query: 625 ttcaatatgggacatcaaaggtatcacgataggttattgcacatgcttgaaatatcagat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 ttcaatatgggacatcaaaggtatcacgataggttattgcacatgcttgaaatatcagat 2741
Query: 685 aaatttatgtctttgacgttagtccaacatatagaaagccagttgatatcatcagttaat 744
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 aaatttatgcttttgacgttagtccaacatatagaaagccagttgatatcatcagttaat 2681
Query: 745 tcaaacaatgttattgctttctggattgcagctagcgacctttatttaccgga-ttagcc 803
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 2680 tcaaacaatgttattgctttctggattgcagctagcgaccttaatttaccggatttagcc 2621
Query: 804 gccaactgtcaggagtatatcttcaggaat-cttctgtcttatttagctctgacaccgta 862
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2620 gccaactgtcaggagtatatcttcaggaatccttctgtcttatttagctctgacaccgta 2561
Query: 863 gagcatattcatgc-aaacatcacatcagtaatgtggaaatccattgagccaaaatttag 921
||||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 2560 gagcata-tcatgcaaaacatcacatcagaaatgtggaaatccattgagcaaaaatttag 2502
Query: 922 aacagatttaggc 934
|||||| ||||||
Sbjct: 2501 aacagaattaggc 2489
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6769
Number of Sequences: 1807
Number of extensions: 6769
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)