BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC12ZD12FM1.SCF screened BAC_end (953 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1517 1542 0.0 >3x_Contig1517 Length = 8289 Score = 1542 bits (778), Expect = 0.0 Identities = 847/862 (98%), Gaps = 6/862 (0%) Strand = Plus / Plus Query: 87 tgaatcatctttggacctgctcatgtatggcaattgagctatgttccatactcccccatt 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5361 tgaatcatctttggacctgctcatgtatggcaattgagctatgttccatactcccccatt 5420 Query: 147 ttctaatgcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaa 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5421 ttctaatgcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaa 5480 Query: 207 ttcgacgattttcttttttagcgatgcaaagaaaccgaatgtcatgcttcaaactgccag 266 ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| Sbjct: 5481 ttcgacgatttccaataatagcgatgcaaagaaaccgaatgtcatgcttcaaactgccag 5540 Query: 267 cacatcggcacctccatcaccagaactaccaatagaatcttcagaatccaatgatgattt 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5541 cacatcggcacctccatcaccagaactaccaatagaatcttcagaatccaatgatgattt 5600 Query: 327 gattcccattgctagtatacctgatgaattgatgaaattgattgatttgttcattgatga 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5601 gattcccattgctagtatacctgatgaattgatgaaattgattgatttgttcattgatga 5660 Query: 387 tttgaaacagcctaaatattccaggcctttaatgattacacaattatctcagatattcca 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5661 tttgaaacagcctaaatattccaggcctttaatgattacacaattatctcagatattcca 5720 Query: 447 aaggttttatgagagatttgatagatcttgccaacaacattttaatgcattagcctcgcc 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5721 aaggttttatgagagatttgatagatcttgccaacaacattttaatgcattagcctcgcc 5780 Query: 507 tggaagtgtgaatgttatgctcaacgcgagagaaacgagaaatagtggattgagtagtat 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5781 tggaagtgtgaatgttatgctcaacgcgagagaaacgagaaatagtggattgagtagtat 5840 Query: 567 cttcaacagatccagaagtagtagttttcgaaatagcagcataagaacaagaactagaac 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5841 cttcaacagatccagaagtagtagttttcgaaatagcagcataagaacaagaactagaac 5900 Query: 627 taattctgaacagaattatcagcaattgttgactccagaagaaatatcccatcaaattaa 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5901 taattctgaacagaattatcagcaattgttgactccagaagaaatatcccatcaaattaa 5960 Query: 687 gctgcaagaggctaataatatcaaaacggaccagattatggatttgtgtgaatgcgaaat 746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5961 gctgcaagaggctaataatatcaaaacggaccagattatggatttgtgtgaatgcgaaat 6020 Query: 747 attcaagaaaatactgcaagttggcacttgtgtcccaaatcatccatacagacaggcgaa 806 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 6021 attcaagaaaatactgcaagttggcacttgtgtcccaaatcatccaacaagacaggcgaa 6080 Query: 807 atcgactagttcgaatgaatgg-aaatgacaagcctatttcgtaataattccggagttta 865 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 6081 atcgactagttcgaatgaatggaaaatgacaagcctatttcgtaataa-tccggagttta 6139 Query: 866 ttgagtttgataagatgttgaatactaaattg-acaccatgaaagagattaagcagtttc 924 |||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||| Sbjct: 6140 ttgagtttgataagatgttgaatactaaattgaacacgatgaaagag-ttaagcag-ttc 6197 Query: 925 gcgaatactttgatttaccagc 946 |||||||| ||||||||||||| Sbjct: 6198 gcgaatac-ttgatttaccagc 6218 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8153 Number of Sequences: 1807 Number of extensions: 8153 Number of successful extensions: 54 Number of sequences better than 1.0e-20: 1 length of query: 953 length of database: 10,358,551 effective HSP length: 16 effective length of query: 937 effective length of database: 10,329,639 effective search space: 9678871743 effective search space used: 9678871743 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)