BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZD12RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1210 1600 0.0
>3x_Contig1210
Length = 6392
Score = 1600 bits (807), Expect = 0.0
Identities = 883/906 (97%), Gaps = 2/906 (0%)
Strand = Plus / Plus
Query: 45 cttctttgaaggaattcgaagaattattggacaaggctgaagctcaaaaggttaaggacc 104
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4955 cttctttgaaggaattcgaagaaaaattggacaaggctgaagctcaaaaggttaaggacc 5014
Query: 105 aagtcgctgctttgagagaattggtcgctagagttcaagccggtgaagaagtcgacgctg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5015 aagtcgctgctttgagagaattggtcgctagagttcaagccggtgaagaagtcgacgctg 5074
Query: 165 aagagttgttgaccaagactgaagaattacaaaccgcttccatgaagttgtttgaactaa 224
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 5075 aagagttgaagaccaagactgaagaattacaaaccgcttccatgaagttgttcgaacaaa 5134
Query: 225 ngtacaagaacgacgcttctaaccaacaaggtggtgaaccaaagcaataagtgtaattag 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5135 tgtacaagaacgacgcttctaaccaacaaggtggtgaaccaaagcaataagtgtaattag 5194
Query: 285 ctgagagatacgatatcattgaaacatgcccagacactactctctttagttccttccgtt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5195 ctgagagatacgatatcattgaaacatgcccagacactactctctttagttccttccgtt 5254
Query: 345 cgagaagaatgataaagttccatcgaaaatctaccaagatataatgatatttgttatgac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5255 cgagaagaatgataaagttccatcgaaaatctaccaagatataatgatatttgttatgac 5314
Query: 405 caacctcccattttaattaaagatgttaaccgaaactattgacgtggtaggacacggttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5315 caacctcccattttaattaaagatgttaaccgaaactattgacgtggtaggacacggttt 5374
Query: 465 ctttgatgactcttttagtattactgaagggttttacaactttttctcttcttacttttt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5375 ctttgatgactcttttagtattactgaagggttttacaactttttctcttcttacttttt 5434
Query: 525 tttctttgtctcacaatttattcacctcaagcttattacttattgagtttctccatgtac 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5435 tttctttgtctcacaatttattcacctcaagcttattacttattgagtttctccatgtac 5494
Query: 585 atatgtaaactacaaatatgtatgaagatgacaacctgtatataaaagactaatcaaaca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5495 atatgtaaactacaaatatgtatgaagatgacaacctgtatataaaagactaatcaaaca 5554
Query: 645 ctatacgttaatttacatctttctatcaagagacctggcttgtattctcctattcgttat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5555 ctatacgttaatttacatctttctatcaagagacctggcttgtattctcctattcgttat 5614
Query: 705 tttggtgatgttacccatgttcacattaattctcaagaaaatcttgtcaatattttaaaa 764
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5615 tttgttgatgttacccatgtccacattaattctcaagaaaatcttgtcaatattttaaaa 5674
Query: 765 ccttgaaaatcccaatttgataaataaaggtcatatatacattaattatcacattaaggg 824
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5675 cctgaaaaatcccaatttgataaataaaggtcatatatacattaattatcacattaaggt 5734
Query: 825 tgatagaacttttcgtcgtagcaaagatacaaataaaggcttcacattgcttttctgctt 884
|||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct: 5735 tgatagaactttccgtcgtagcaaagatacaaataaaggctcaacattgctttcctgcat 5794
Query: 885 atgacacttatggttgtccaagtatctcctttgactaaaatcatttggccttagtggcgt 944
||||||| ||||| ||| |||||||||||||||||||| ||||||| |||||| ||||||
Sbjct: 5795 atgacac-tatgggtgtacaagtatctcctttgactaagatcattt-gccttattggcgt 5852
Query: 945 actagc 950
||||||
Sbjct: 5853 actagc 5858
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8621
Number of Sequences: 1807
Number of extensions: 8621
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)