BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE01FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1548 0.0
>3x_Contig1728
Length = 20685
Score = 1548 bits (781), Expect = 0.0
Identities = 826/840 (98%), Gaps = 4/840 (0%)
Strand = Plus / Minus
Query: 87 gtttatatattgacggaggattatacaagtttgtttatggtgcaacagaagtggttacga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12062 gtttatatattgacggaggattatacaagtttgtttatggtgcaacagaagtggttacga 12003
Query: 147 aatcacgcataattaaagctcttttatattcaagcaaggagtttagacgtcaatttttgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12002 aatcacgcataattaaagctcttttatattcaagcaaggagtttagacgtcaatttttgc 11943
Query: 207 aggtgatgctccaagaagaccctaacatgttaaaagcgaagaaaaaaactgatggaccag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11942 aggtgatgctccaagaagaccctaacatgttaaaagcgaagaaaaaaactgatggaccag 11883
Query: 267 aagaaattcaacgattacaaaaatggcaactgtgccttctatcgatcaaatcagtcgata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11882 aagaaattcaacgattacaaaaatggcaactgtgccttctatcgatcaaatcagtcgata 11823
Query: 327 aagatgttctaacaggtttgtgttctgattatatcattccttctcttgtggaagaatcgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11822 aagatgttctaacaggtttgtgttctgattatatcattccttctcttgtggaagaatcgt 11763
Query: 387 ctccgttagtaagagtttattcagaatggttcattgcatatgacctatgggttacagcga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11762 ctccgttagtaagagtttattcagaatggttcattgcatatgacctatgggttacagcga 11703
Query: 447 cagataatcataaaaatccaaatgaggactttctgttcaaacttttagaagacacctctc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11702 cagataatcataaaaatccaaatgaggactttctgttcaaacttttagaagacacctctc 11643
Query: 507 gtcctgttttacaagcaagtgttgaacgtttgttattcttatctttgaaggcagcgaagg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11642 gtcctgttttacaagcaagtgttgaacgtttgttattcttatctttgaaggcagcgaagg 11583
Query: 567 agacaggtcattttttcaggccaatggaaagatttgtcgcacaactgataactaattgct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11582 agacaggtcattttttcaggccaatggaaagatttgtcgcacaactgataactaattgct 11523
Query: 627 cctcaaacaaaccattaattagacatttctctaattccctcattcttttgttttggccaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11522 cctcaaacaaaccattaattagacatttctctaattccctcattcttttgttttggccaa 11463
Query: 687 cctttgaagatgacatcaaagataatattttgcgatccattatttctaagctatacagcg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11462 cctttgaagatgacatcaaagataatattttgcgatccattatttctaagctatacagcg 11403
Query: 747 atgctaagaagatccaagtacaaggtcaattcagagccggtgacgcanacacttggagca 806
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 11402 atgctaagaagatccaagtacaaggtcaattcagagccggtgacgcaaacacttggagca 11343
Query: 807 tcaataacgacctttaaagtta--cagtatttttggcggcgtattattgaaanatatgga 864
|||||||||||||| |||||| ||||| ||||||||||||||||||||| ||||||
Sbjct: 11342 tcaataacgacctt--aagttaacaagtatatttggcggcgtattattgaaaattatgga 11285
Query: 865 tcataaagttccatatataaatnagtagatattcaaagccattaacatcgatgaccgtga 924
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 11284 tcataaagttccatatataaatagtaagatattcaaagccattaacatcgatgacggtga 11225
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6823
Number of Sequences: 1807
Number of extensions: 6823
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)