BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE01RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1330 1691 0.0
>3x_Contig1330
Length = 7703
Score = 1691 bits (853), Expect = 0.0
Identities = 869/873 (99%), Gaps = 1/873 (0%)
Strand = Plus / Minus
Query: 39 gcttcaatgatacagtgtcaaaaaggtgaattgattccaatggactatcgattttatctt 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4934 gcttcaatgatacagtgtcaaaaaggtgaattgattccaatggactatcgattttatctt 4875
Query: 99 tattgttgtcaaagaaggatttcagttctgtgagcttatcagtaatgttaatgtccttga 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4874 tattgttgtcaaagaaggatttcagttctgtgagcttatcagtaatgttaatgtccttga 4815
Query: 159 agattaaaactaagagctccaagagtattttccatattttaagtttgacatgatctgtgt 218
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4814 agattaaaactaagagctccaagagtattttccatattttaagtttgacatgagctgtgt 4755
Query: 219 ccatttcactaaaataaacccacatatcagctggtatgctgatcccttcatcgagacagt 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4754 ccatttcactaaaataaacccacatatcagctggtatgctgatcccttcatcgagacagt 4695
Query: 279 aattaataaacgaacacatcacaacgaaatggaattgttcatggtttttgatcacgaaca 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4694 aattaataaacgaacacatcacaacgaaatggaattgttcatggtttttgatcacgaaca 4635
Query: 339 gaatatctctataatcagccaacttcctttcattgcctggaatcaactgcaatctaaaat 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4634 gaatatctctataatcagccaacttcctttcattgcctggaatcaactgcaatctaaaat 4575
Query: 399 attgaaacagcactttccaaagagacgtatcgagctttgatataagcttggatagatttc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4574 attgaaacagcactttccaaagagacgtatcgagctttgatataagcttggatagatttc 4515
Query: 459 gtagtgcaatcttattatgacttggatcatttttatacagcgggatcttacaaagaagaa 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4514 gtagtgcaatcttattatgacttggatcatttttatacagcgggatcttacaaagaagaa 4455
Query: 519 cgtaatccacatacatcttctcattgacccatgttgtactttgcaacctctctctgagtg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4454 cgtaatccacatacatcttctcattgacccatgttgtactttgcaacctctctctgagtg 4395
Query: 579 ctgaaaaatattgctctgcgagatcaatgcgatgagtctcttcaatcaataacgtaacaa 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4394 ctgaaaaatattgctctgcgagatcaatgcgatgagtctcttcaatcaataacgtaacaa 4335
Query: 639 gatcgttagtgatctgaaaatcttgctctaatgaaagctggaaaccgccatccttcaaat 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4334 gatcgttagtgatctgaaaatcttgctctaatgaaagctggaaaccgccatccttcaaat 4275
Query: 699 atcgcagacatcgtatagcctgatttatcaatgtataatactgacgaagttccaattcag 758
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4274 atcgcagacatcgtatagcttgatttatcaatgtataatactgacgaag-tccaattcag 4216
Query: 759 tttcaatttccgtaacaacatcatgtgcagtcaaagtgtactgtttcgagagatgatata 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4215 tttcaatttccgtaacaacatcatgtgcagtcaaagtgtactgtttcgagagatgatata 4156
Query: 819 tcaaatctaactgctgtgcttttctgctcaaggacttttgatcaaaagagatcggaacgt 878
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4155 tcaaatctaactgctgtgcttttctgttcaaggacttttgatcaaaagagatcggaacgt 4096
Query: 879 ttagcagctcatctttgaaggtgtccatagcta 911
|||||||||||||||||||||||||||||||||
Sbjct: 4095 ttagcagctcatctttgaaggtgtccatagcta 4063
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7291
Number of Sequences: 1807
Number of extensions: 7291
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)