BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC12ZE02RM1.SCF screened BAC_end (925 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1762 1160 0.0 >3x_Contig1762 Length = 22098 Score = 1160 bits (585), Expect = 0.0 Identities = 617/624 (98%), Gaps = 3/624 (0%) Strand = Plus / Plus Query: 305 atggttctactgtgtggaggaagatattgaagtccgactatcttgacgggttgtaagatc 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15 atggttctactgtgtggaggaagatattgaagtccgactatcttgacgggttgtaagatc 74 Query: 365 acaaattagaaaagcgttagtgtggaattgctaggaattaaaccttaaatatgaactata 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75 acaaattagaaaagcgttagtgtggaattgctaggaattaaaccttaaatatgaactata 134 Query: 425 taactgaagatgcacaaagaagtatattgaatagaagggaaaatttaagtacaaatttga 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 taactgaagatgcacaaagaagtatattgaatagaagggaaaatttaagtacaaatttga 194 Query: 485 aaactttgtaattagagtttggtaagatcagtgttcgattagttccgttaaatatccgtg 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 aaactttgtaattagagtttggtaagatcagtgttcgattagttccgttaaatatccgtg 254 Query: 545 agcg-ttctgtgggttttcatcgtaagtaactgacatttcagtgtcatgtgtaccctcat 603 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 255 agcggttctgtgggttttcatcgtaagtaactgacatttcagtgtcatgtgtaccctcat 314 Query: 604 cggtggaagatgacacaaaggatgaatgtagtgatgttgtggaaggcgtctgagactctg 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 315 cggtggaagatgacacaaaggatgaatgtagtgatgttgtggaaggcgtctgagactctg 374 Query: 664 gatctgcaatcgatacaacatattcgtcgtcgaatggatttgtcgtctgtggcctcctga 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 375 gatctgcaatcgatacaacatattcgtcgtcgaatggatttgtcgtctgtggcctcctga 434 Query: 724 cagaatctgcaacatatggaggcactgagggcaaactttttgaaactntgttattattat 783 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 435 cagaatctgcaacatatggaggcactgagggcaaactttttgaaactttgttattattat 494 Query: 784 gagcagtcgtcgatactctggttgaagtcttggtggtttgctgagactgtgcaataaacg 843 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 495 gagcagtcgtcgatactctggttgtagtcttggtggtttgctgagactgtgcaataaacg 554 Query: 844 tttcgatatcgtcgtatcccatttttct-ccaatgtcgtgggagaagctcttttcgtgtt 902 || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 555 ttccgatatcgtcgtatcccatttttctcccaatgtcgtgggagaagctcttttcgtgtt 614 Query: 903 cgataaga-ttcttcttcgtctct 925 |||||||| |||| |||||||||| Sbjct: 615 cgataagatttctccttcgtctct 638 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6836 Number of Sequences: 1807 Number of extensions: 6836 Number of successful extensions: 50 Number of sequences better than 1.0e-20: 1 length of query: 925 length of database: 10,358,551 effective HSP length: 16 effective length of query: 909 effective length of database: 10,329,639 effective search space: 9389641851 effective search space used: 9389641851 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)