BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE03RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1655 0.0
>3x_Contig1640
Length = 15521
Score = 1655 bits (835), Expect = 0.0
Identities = 879/890 (98%), Gaps = 3/890 (0%)
Strand = Plus / Plus
Query: 44 cttcggcatacttatgacattatctaccagagaccggacaacataataggcatacaatct 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13396 cttcggcatacttatgacattatctaccagagaccggacaacataataggcatacaatct 13455
Query: 104 gatgaccaaaaacgcttcctattggccagtaagctcattaaagcgtctgtctctattctt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13456 gatgaccaaaaacgcttcctattggccagtaagctcattaaagcgtctgtctctattctt 13515
Query: 164 atctggcgtctaattgatgtagtggtttccccttgtctctgattcgtgactcattatagg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 13516 atctggcgtctaattgatgtagtggtttccccttgtctctgattcgtgactcaagatagg 13575
Query: 224 gcagacagccacatagaagcaatcaataaccgaccgatgcttcgctgtcctagtattatt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13576 gcagacagccacatagaagcaatcaataaccgaccgatgcttcgctgtcctagtattatt 13635
Query: 284 caatagggattggcgtagaaaatcgcacggaagcagcagcgaaaaaaagcctttcatttt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13636 caatagggattggcgtagaaaatcgcacggaagcagcagcgaaaaaaagcctttcatttt 13695
Query: 344 acgtagtttttctggcgtttttttgttgtgaatttgacctttttatttacttgtcttgtg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13696 acgtagtttttctggcgtttttttgttgtgaatttgacctttttatttacttgtcttgtg 13755
Query: 404 tttttttctcaacgttcctctgccacagagaagcaggttggaatttcaacctttcaaata 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13756 tttttttctcaacgttcctctgccacagagaagcaggttggaatttcaacctttcaaata 13815
Query: 464 tttagaccagtttgaaacattcttccggggtttctctatggcttctatttcattcattta 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13816 tttagaccagtttgaaacattcttccggggtttctctatggcttctatttcattcattta 13875
Query: 524 tctgttatcctcaagtatatataaatatgggatgtacatgccatgggcaatttaagacga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13876 tctgttatcctcaagtatatataaatatgggatgtacatgccatgggcaatttaagacga 13935
Query: 584 aatcatctaaccggtaaacgactggtgtttttttttttggttgatggtttccttaaatta 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13936 aatcatctaaccggtaaacgactggtgtttttttttttggttgatggtttccttaaatta 13995
Query: 644 tacaaatccagagataatcatatctaattaaccgctgtctgctctgctttcactgctttc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13996 tacaaatccagagataatcatatctaattaaccgctgtctgctctgctttcactgctttc 14055
Query: 704 gcatcaccgttttcttctttttaccttttttaagaaataaagatcttactggtactgcta 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14056 gcatcaccgttttcttctttttaccttttttaagaaataaagatcttactggtactgcta 14115
Query: 764 cgctaggtcatccacttgtgattaaat-acattgacattagaaaacttctttattttcta 822
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 14116 cgctaggtcatccacttgtgatttaataacattgacattagaaaacttctttattttcta 14175
Query: 823 atatttactggcacatattaccgctattattattatttgagnagaaagttactttttttc 882
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 14176 atatttactggcacatattaccgctattattattatttgagagaaaagttactttttttc 14235
Query: 883 tttaaacggga-cttttaaaatctcacagaa-tgatactgtcactctttt 930
||||||| ||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct: 14236 tttaaaccggaccttttaaaatctcacagaattgatactgtcactttttt 14285
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,481
Number of Sequences: 1807
Number of extensions: 13481
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)