BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE04FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1562 0.0
>3x_Contig1795
Length = 38452
Score = 1562 bits (788), Expect = 0.0
Identities = 811/815 (99%), Gaps = 3/815 (0%)
Strand = Plus / Plus
Query: 86 tggtgaatgttttgatggccatattcatagttcggtttattttattgtatatgcttcttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32187 tggtgaatgttttgatggccatattcatagttcggtttattttattgtatatgcttcttt 32246
Query: 146 tgatcttaaaagggtaactttgtccaaaagtaatccaccgcaatagacagtacgacttgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32247 tgatcttaaaagggtaactttgtccaaaagtaatccaccgcaatagacagtacgacttgg 32306
Query: 206 cagcgtccgatggaaattctcgtggactggcacgttttgtgttggttttttcatcgagta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32307 cagcgtccgatggaaattctcgtggactggcacgttttgtgttggttttttcatcgagta 32366
Query: 266 gtctatcaatggatattaagttgggaccacttttgtgccttccttctttcccccactgtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32367 gtctatcaatggatattaagttgggaccacttttgtgccttccttctttcccccactgtt 32426
Query: 326 aaaatttcccaagtcgtgataagcggttttcaaggagagattaaaccttggagattttta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32427 aaaatttcccaagtcgtgataagcggttttcaaggagagattaaaccttggagattttta 32486
Query: 386 agaactcgaatggattcgcaaacatgatattcgagtgtcagagatctgcaacatctggcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32487 agaactcgaatggattcgcaaacatgatattcgagtgtcagagatctgcaacatctggcc 32546
Query: 446 agaattcccagtaatttcaaaagaaaaattaaactaaaaggtaaaccctgtgtatatcct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32547 agaattcccagtaatttcaaaagaaaaattaaactaaaaggtaaaccctgtgtatatcct 32606
Query: 506 ttatttgtagtatactacttatcttgtgctttacagacgtgactagttccctactttcta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32607 ttatttgtagtatactacttatcttgtgctttacagacgtgactagttccctactttcta 32666
Query: 566 tacttaagtacggagactattttcatcaaaactacccggtacgatccggcgtactggtag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32667 tacttaagtacggagactattttcatcaaaactacccggtacgatccggcgtactggtag 32726
Query: 626 tgattatagaagggctaacatttgttgcagtggcagtaacagtatctgaaggtccaccac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32727 tgattatagaagggctaacatttgttgcagtggcagtaacagtatctgaaggtccaccac 32786
Query: 686 cttcattatcgcttttcttggttcctcctctgttcttgtttctaacgtactctacgtttg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32787 cttcattatcgcttttcttggttcctcctctgttcttgtttctaacgtactctacgtttg 32846
Query: 746 gtctgttatcatgttctcgtgacataagtctgtgacactcctgatcggatgtcttgtgct 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32847 gtctgttatcatgttctcgtgacataagtctgtgacactcctgatcggatgtcttgtgct 32906
Query: 806 tcanatatatgtagttgtgtaatgccattaccagcgaatgaagg-atgtgccggtctctc 864
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 32907 tcaaatatatgtagttgtgtaatgccattaccagcgaatgaaggaatgtgccggtctctc 32966
Query: 865 accg-tatcagctgaactctt-tagattgggatgc 897
|||| |||||||||||||||| |||||||||||||
Sbjct: 32967 accgttatcagctgaactcttatagattgggatgc 33001
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5678
Number of Sequences: 1807
Number of extensions: 5678
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)