BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE05FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig722 1628 0.0
>3x_Contig722
Length = 2307
Score = 1628 bits (821), Expect = 0.0
Identities = 845/851 (99%), Gaps = 2/851 (0%)
Strand = Plus / Plus
Query: 87 atcgaatgcctcttcttcagaattggctttagtagcaaacgcaataaacgtgctctttct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 atcgaatgcctcttcttcagaattggctttagtagcaaacgcaataaacgtgctctttct 1479
Query: 147 gtcagtgatgggatcacttacgtaccatccttcgaagggatcaatctttaaattctcaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 gtcagtgatgggatcacttacgtaccatccttcgaagggatcaatctttaaattctcaaa 1539
Query: 207 tttatcagatatatcaacctcatctgaaccagaagcctcttccccctcctcagtataaag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 tttatcagatatatcaacctcatctgaaccagaagcctcttccccctcctcagtataaag 1599
Query: 267 cacaccatcgagctccgtcaagaaatcgaatatacaaacaagtccagggttaaatacaga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 cacaccatcgagctccgtcaagaaatcgaatatacaaacaagtccagggttaaatacaga 1659
Query: 327 ttccaacacttcagtgaaaagatggtttaaatatttgacatcatatagtgctgatatttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1660 ttccaacacttcagtgaaaagatggtttaaatatttgacatcatatagtgctgatatttt 1719
Query: 387 agcagataaactcacttctagtagatgtggcggttctgtttcagggtagtgctcgggaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1720 agcagataaactcacttctagtagatgtggcggttctgtttcagggtagtgctcgggaaa 1779
Query: 447 cgatagatgtaatgtgaaatcctcgtgttgaggaactttaatttttattctgtcattatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1780 cgatagatgtaatgtgaaatcctcgtgttgaggaactttaatttttattctgtcattatt 1839
Query: 507 aaccaccgttagaagatctgggtagatagcatttatcgcatcgatttcgtcatttacatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1840 aaccaccgttagaagatctgggtagatagcatttatcgcatcgatttcgtcatttacatc 1899
Query: 567 atcattgagtaccattatagatatattggaagtgttgaattgtattccaagccaatgtca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1900 atcattgagtaccattatagatatattggaagtgttgaattgtattccaagccaatgtca 1959
Query: 627 atcccaaacaaatgagcaaaatattttaaatgctaaagttgcatatacaaccgatatttt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1960 atcccaaacaaatgagcaaaatattttaaatgctaaagttgcatatacaaccgatatttt 2019
Query: 687 ccaaagcgttaatcatctcagctcatctcaatacaaatcgtcatgtttatgactgtgatc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2020 ccaaagcgttaatcatctcagctcatctcaatacaaatcgtcatgtttatgactgtgatc 2079
Query: 747 atcttacataaatttgaaaactgatgcttaagtgcatgatacaaaatattataagaatct 806
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2080 atcttacataaatttgaaaactgatgcttaagtgcatgatacaaaatatta-aagaatct 2138
Query: 807 tcgaaagagacaaacttagttcanaatttcngagataggattagaaaagtagtttggctt 866
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 2139 tcgaaagagacaaacttagttcaaaatttcggagataggattagaaaagtagtttggctt 2198
Query: 867 cagtcagaggattagtagtcaactacttttaaa-gatacttcctattgtataactatatt 925
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2199 cagtcagaggattagtagtcaactacttttaaaggatacttcctattgtataactatatt 2258
Query: 926 tcaaccatgcc 936
|||| |||||
Sbjct: 2259 ccaacaatgcc 2269
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6882
Number of Sequences: 1807
Number of extensions: 6882
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)