BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE05RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig581 1614 0.0
>3x_Contig581
Length = 1616
Score = 1614 bits (814), Expect = 0.0
Identities = 833/837 (99%), Gaps = 2/837 (0%)
Strand = Plus / Minus
Query: 50 agcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgatg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 agcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgatg 776
Query: 110 gaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaat 716
Query: 170 agccttgttaacatccttagtgtgaataccggcagcaagaccatattcagtagtcgttag 229
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 715 agccttgttaacatccttagtgtgaataccggcagcaagaccatattcag-agtcgttag 657
Query: 230 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 597
Query: 290 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 537
Query: 350 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 477
Query: 410 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 417
Query: 470 aaacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaattttt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaattttt 357
Query: 530 ctaagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagactt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctaagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagactt 297
Query: 590 caccggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcagcat 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 caccggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcagcat 237
Query: 650 caccgaaaacgatatttggagacttaccaccaagttctaaagtgaccttcttgatggaat 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 caccgaaaacgatatttggagacttaccaccaagttctaaagtgaccttcttgatggaat 177
Query: 710 cggcacaagttttcataatgtgacgaccagtagcagtggaaccagtgaaagcgaccttct 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cggcacaagttttcataatgtgacgaccagtagcagtggaaccagtgaaagcgaccttct 117
Query: 770 tgatgtcaggatgggtacaaattctttcaccgacgattttaccgaaacctgngatgatgt 829
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 116 tgatgtcaggatgggtacaaattctttcaccgacgattttaccgaaacctgggatgatgt 57
Query: 830 taacaacaccctttgttacaccagcttcttgcaccaattggcatgcatatagagcag 886
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 56 taacaacaccctttg-tacaccagcttcttgcaccaattagcatgcatatagagcag 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6168
Number of Sequences: 1807
Number of extensions: 6168
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)