BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE06RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig774 1134 0.0
3x_Contig1253 565 e-161
>3x_Contig774
Length = 2612
Score = 1134 bits (572), Expect = 0.0
Identities = 572/572 (100%)
Strand = Plus / Plus
Query: 45 ctttgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccat 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 ctttgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccat 2088
Query: 105 ctggcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 ctggcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaag 2148
Query: 165 tgtcaatgagattgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 tgtcaatgagattgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggca 2208
Query: 225 atatgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtgg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 atatgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtgg 2268
Query: 285 ttttgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 ttttgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagt 2328
Query: 345 gaacaatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 gaacaatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaat 2388
Query: 405 gatgggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 gatgggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaag 2448
Query: 465 ccatgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2449 ccatgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtct 2508
Query: 525 aagtcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttagg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2509 aagtcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttagg 2568
Query: 585 attagaaagagaactagaatttggattagata 616
||||||||||||||||||||||||||||||||
Sbjct: 2569 attagaaagagaactagaatttggattagata 2600
>3x_Contig1253
Length = 5628
Score = 565 bits (285), Expect = e-161
Identities = 301/305 (98%), Gaps = 1/305 (0%)
Strand = Plus / Plus
Query: 636 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 76
Query: 696 atacgtgaaatgcctttgtacaaatttacacatcaaataacaatcataaaactggcagct 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 atacgtgaaatgcctttgtacaaatttacacatcaaataacaatcataaaactggcagct 136
Query: 756 tcagtgaatacgaagatactcatgttctcatattctataaagaactgagatagtgtaatt 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tcagtgaatacgaagatactcatgttctcatattctataaagaactgagatagtgtaatt 196
Query: 816 tggttaatcgactacttttgaagcatatacaaatgtatcataccccgaattgtctgctgt 875
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 197 tggttaatcgactacttttgaagcatatacaaatgtatcata-cccgaattgtctgctga 255
Query: 876 aacaagtgcagctgcagactgttaacaggcaaaagtcatgcaattgatcaaatctgtatg 935
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 256 aacaagtgcagctgcagactgtaaacagccaaaagtcatgcaattgatcaaatctgtatg 315
Query: 936 ataat 940
|||||
Sbjct: 316 ataat 320
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6729
Number of Sequences: 1807
Number of extensions: 6729
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)