BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE08FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1705 1586 0.0
>3x_Contig1705
Length = 16734
Score = 1586 bits (800), Expect = 0.0
Identities = 836/845 (98%), Gaps = 3/845 (0%)
Strand = Plus / Minus
Query: 88 taaggagtgtacaaagaaacgggacatcttcaatgagtgttccagtgataccataccttg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16283 taaggagtgtacaaagaaacgggacatcttcaatgagtgttccagtgataccataccttg 16224
Query: 148 actatgatatagtagatctcggttctgacattaaaaaaccagattttccgcaattgagtg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16223 actatgatatagtagatctcggttctgacattaaaaaaccagattttccgcaattgagtg 16164
Query: 208 aatctcatcgcattaatgaacaacagtactatatcactgaggacacgccattgaataaga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16163 aatctcatcgcattaatgaacaacagtactatatcactgaggacacgccattgaataaga 16104
Query: 268 gaaacttcatgtatcagccttgtgctgcaaatctaatgttggataagctcaagtattgtg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16103 gaaacttcatgtatcagccttgtgctgcaaatctaatgttggataagctcaagtattgtg 16044
Query: 328 gcacagactattttgataaaagctctatcaatttgatggatagatccgacaaattagcat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16043 gcacagactattttgataaaagctctatcaatttgatggatagatccgacaaattagcat 15984
Query: 388 tttcattggacgaccattcggtgagtgtcagcgagaactgcgggtggaggagcgttagaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15983 tttcattggacgaccattcggtgagtgtcagcgagaactgcgggtggaggagcgttagaa 15924
Query: 448 gcgacgtttgtatgaaagaaggaaaaatatactgggaagtggaggtgaaaaacgtttctg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15923 gcgacgtttgtatgaaagaaggaaaaatatactgggaagtggaggtgaaaaacgtttctg 15864
Query: 508 atacatcacacatcagatgcgggataagcagaagagaggcatcaacagaaactccagtcg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15863 atacatcacacatcagatgcgggataagcagaagagaggcatcaacagaaactccagtcg 15804
Query: 568 gatgtgatttttacggttatagcattagagataaaggattgcaagttattcacgaaggcc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15803 gatgtgatttttacggttatagcattagagataaaggattgcaagttattcacgaaggcc 15744
Query: 628 gcttgcatacagttttgaaaccacacgagatgcaagcaggtgatagaatcggatttctac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15743 gcttgcatacagttttgaaaccacacgagatgcaagcaggtgatagaatcggatttctac 15684
Query: 688 tgactttaccttccctgcagtctcaaagcgagcaagccatggattatagtttaaaacgaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15683 tgactttaccttccctgcagtctcaaagcgagcaagccatggattatagtttaaaacgaa 15624
Query: 748 tccaagagctaaacaacgacgacagccgcaccaacanaaggaataagaaattcaatangg 807
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 15623 tccaagagctaaacaacgacgacagccgcaccaacaaaaggaataagaaattcaataagg 15564
Query: 808 aattctancagtttttactgcgttcatgcgagccaacgaatgtagttagagatcaaa-tg 866
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 15563 aattctacaagtttttactgcgttcatgcgagccaacgaatgtagttagagatcaaattg 15504
Query: 867 ccatcagatatataaatcaattgtttttacg-aagtaccgattatgtcaaaactacaaac 925
|||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 15503 ccatcagatataaaaatcaattg-ttttacgaaagtaccgattatgtcaaaactacaaaa 15445
Query: 926 ccgga 930
|||||
Sbjct: 15444 ccgga 15440
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5510
Number of Sequences: 1807
Number of extensions: 5510
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)