BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE11FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig470 1572 0.0
>3x_Contig470
Length = 2866
Score = 1572 bits (793), Expect = 0.0
Identities = 823/832 (98%), Gaps = 1/832 (0%)
Strand = Plus / Minus
Query: 86 cttctcaagtcataaagaccgagggtggagatatcgattccatcgattgtgattttgcct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 cttctcaagtcataaagaccgagggtggagatatcgattccatcgattgtgattttgcct 2555
Query: 146 tcaaaaggttctaaaattctgaataaggctagagtcaatgtactcttaccagcaccggtc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554 tcaaaaggttctaaaattctgaataaggctagagtcaatgtactcttaccagcaccggtc 2495
Query: 206 ctaccgacaacattttttttttcttgatgcttaatcctcaagtcgatatctttgagaact 265
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2494 ctaccgacaacaccaattttttcttgatgcttaatcctcaagtcgatatctttgagaact 2435
Query: 266 ggatccaagttttctctgtatttagtagtataatgttcgaatgtaatttcacctctcttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2434 ggatccaagttttctctgtatttagtagtataatgttcgaatgtaatttcacctctcttg 2375
Query: 326 ggccaattttttggtggcctgctatcttcgatgacccgtataccttcaggcttaaggtca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2374 ggccaattttttggtggcctgctatcttcgatgacccgtataccttcaggcttaaggtca 2315
Query: 386 cgatattcaattattctttccacactaacaatggtggtttcaatgttcactgccattctg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2314 cgatattcaattattctttccacactaacaatggtggtttcaatgttcactgccattctg 2255
Query: 446 atgatccacatcaaagaggaggaaacttgaagagcataactcattaacaaacctatcaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2254 atgatccacatcaaagaggaggaaacttgaagagcataactcattaacaaacctatcaaa 2195
Query: 506 ccagcgctaattggattagaagttccaagtgaagctagcgccattagcgacgtaattagt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 ccagcgctaattggattagaagttccaagtgaagctagcgccattagcgacgtaattagt 2135
Query: 566 acaatcactgcaccgatcgtttgcaaacgcatagataaccatctgttagttgatctgaaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2134 acaatcactgcaccgatcgtttgcaaacgcatagataaccatctgttagttgatctgaaa 2075
Query: 626 ttgaaaatgaaattgatgttagtttgaatgttttcaaagttgtaataattgaatatattg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 ttgaaaatgaaattgatgttagtttgaatgttttcaaagttgtaataattgaatatattg 2015
Query: 686 gcgtgtttgtaagcattaataacaacatgaccacccagggtttcactaagcaatgacata 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 gcgtgtttgtaagcattaataacaacatgaccacccagggtttcactaagcaatgacata 1955
Query: 746 actggagaatatgaaatactagttaatctcttcaattctctagacaatacaacgtaaagc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 actggagaatatgaaatactagttaatctcttcaattctctagacaatacaacgtaaagc 1895
Query: 806 gtttgatagtaatagtaaatacccaac-aaatggtgttgaacaacaaaaaccatggcata 864
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1894 gtttgatagtaatagtaaatacccaacaaaatggtgttgaacaacaaaaaccatggcata 1835
Query: 865 ctgacagtgantataacaatcgtaatcaagtagttcagcattgagcggaaaa 916
|||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 1834 ctgacagtgataataacaatcgtaatcaagtagtcaagcattgagcggaaaa 1783
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8531
Number of Sequences: 1807
Number of extensions: 8531
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)