BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE11RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1572 1631 0.0
>3x_Contig1572
Length = 12810
Score = 1631 bits (823), Expect = 0.0
Identities = 872/886 (98%), Gaps = 2/886 (0%)
Strand = Plus / Plus
Query: 43 gcttggctcaccatcgtatacgattttttccctgattaacccatcgtcctcttcatcttc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8367 gcttggctcaccatcgtatacgattttttccctgattaacccatcgtcctcttcatcttc 8426
Query: 103 ctcatcaacatcttgaagctcagattcggatgtagccttactaccggcttctctttcaga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8427 ctcatcaacatcttgaagctcagattcggatgtagccttactaccggcttctctttcaga 8486
Query: 163 gatacgcatgataaaatccctatcggatgggatatgtgacaaatcgttcttgtccttttg 222
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8487 gatacgcaagataaaatccctatcggatgggatatgtgacaaatcgttcttgaccttttg 8546
Query: 223 gttttctaagtctctgactcttctgattctggtcttttctctctcagtagccaaagttgt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8547 gttttctaagtctctgactcttctgattctggtcttttctctctcagtagccaaagttgt 8606
Query: 283 ggcgactatcgtctcagctctaacaaatctgttcttcttactacgtttctgtttctcttc 342
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8607 ggcgactatcgtctcagctctaacaaatctgttcttctta-tacgtttctgtttctcttc 8665
Query: 343 ttgctcctttctcttcttggcaagctcctgcttctccaacctagtacgatcagcatttct 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8666 ttgctcctttctcttcttggcaagctcctgcttctccaacctagtacgatcagcatttct 8725
Query: 403 tctctttcttaaaagaacctctgggttcgagttcaatggttgtgacatttgttgcttcta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8726 tctctttcttaaaagaacctctgggttcgagttcaatggttgtgacatttgttgcttcta 8785
Query: 463 tattactgccctgtttattaatctcagcacaaaccagctctatataatacaacttatatg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8786 tattactgccctgtttattaatctcagcacaaaccagctctatataatacaacttatatg 8845
Query: 523 ctcctaatacttcagattagccaaggtcatctctcattgaaagctttattcataatcttt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8846 ctcctaatacttcagattagccaaggtcatctctcattgaaagctttattcataatcttt 8905
Query: 583 aatttcatctcatcgcatctcatcgcactgaacttttttttcctcgccaaaaaaattttc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8906 aatttcatctcatcgcatctcatcgcactgaacttttttttcctcgccaaaaaaattttc 8965
Query: 643 tgtaacgaaaagaaacacttccagtcacgtgaactgtgaaaccaagatcttctgtttgac 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8966 tgtaacgaaaagaaacacttccagtcacgtgaactgtgaaaccaagatcttctgtttgac 9025
Query: 703 actcagacaagtagatgatcaattacaattacaattacaagctgacctcgaatagggtac 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9026 actcagacaagtagatgatcaattacaattacaattacaagctgacctcgaatagggtac 9085
Query: 763 tggcaagttggcgtttacctgngatgatctgttgctgcagcatgttgtaccccagcaaga 822
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 9086 tggcaagttggcgtttacctgggatgatctgttgctgcagcatggtgtaccccagcaaga 9145
Query: 823 ttcttca-gatttaatgggaacatttcgggaaagtacccaaagaatgggaaagcagttaa 881
||||||| ||| |||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 9146 ttcttcacaattaaatgggaacatttcggaaagttacccaaagaatgggaagcaagttaa 9205
Query: 882 atagtcaaatagtcaaattgtgactgtctatatgtgaatcgtatat 927
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9206 atagtcaaatagtcaaattgtgactgtctatatgtgaatcgtatat 9251
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8667
Number of Sequences: 1807
Number of extensions: 8667
Number of successful extensions: 202
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)