BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZE12FM1.SCF screened BAC_end
         (974 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1575                                                        1405   0.0  

>3x_Contig1575 
          Length = 11952

 Score = 1405 bits (709), Expect = 0.0
 Identities = 758/768 (98%), Gaps = 5/768 (0%)
 Strand = Plus / Minus

                                                                        
Query: 85   ttattttttcgtttctatcaacaattttacatcaaagctttagctgtcctaccgtaaagt 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6002 ttattttttcgtttctatcaacaattttacatcaaagctttagctgtcctaccgtaaagt 5943

                                                                        
Query: 145  ttgaaactggttttgccaacatagaaaacaatccaggccggttctcagtcccacgcattt 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5942 ttgaaactggttttgccaacatagaaaacaatccaggccggttctcagtcccacgcattt 5883

                                                                        
Query: 205  catagtacgcgtcattataggtaaaatccaaaaaaaaaaaaagttgaagatttcagaata 264
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5882 catagtacgcgtcagtataggtaaaatccaaaaaaaaaaaaagttgaagatttcagaata 5823

                                                                        
Query: 265  ttagcatagaggccaaaatccaacaaaaattatactctatactttgcgtaggcatatttt 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5822 ttagcatagaggccaaaatccaacaaaaattatactctatactttgcgtaggcatatttt 5763

                                                                        
Query: 325  gccatactgaaaaagttccattttttttttttttaatgttttaccctaaccaactgattc 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5762 gccatactgaaaaagttccattttttttttttttaatgttttaccctaaccaactgattc 5703

                                                                        
Query: 385  ttttcaaagaaaaaatcatattcaagtcccacagaaaagagggtagggtaaatctgccat 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5702 ttttcaaagaaaaaatcatattcaagtcccacagaaaagagggtagggtaaatctgccat 5643

                                                                        
Query: 445  atccttcaatttagatggaattggcggctaaaagacgaattccatgaaatatagagaaac 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5642 atccttcaatttagatggaattggcggctaaaagacgaattccatgaaatatagagaaac 5583

                                                                        
Query: 505  agcaagaaataatgccatctaagctatattgtaaacctcgtagataagtttgatagaaac 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5582 agcaagaaataatgccatctaagctatattgtaaacctcgtagataagtttgatagaaac 5523

                                                                        
Query: 565  gatcaatcagattggaaaggaggcaaagttagagggtttcttagggaaggcggtctctta 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5522 gatcaatcagattggaaaggaggcaaagttagagggtttcttagggaaggcggtctctta 5463

                                                                        
Query: 625  attcctgtcacgtggcaataaattccctttcgattcttcatacaactgtgagttggtact 684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5462 attcctgtcacgtggcaataaattccctttcgattcttcatacaactgtgagttggtact 5403

                                                                        
Query: 685  cttttttttgaagtcctgcttcaaaagatactggtagtttgttgacacatacttatctga 744
            || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5402 ctcttttctgaagtcctgcttcaaaagatactggtagtttgttgacacatacttatctga 5343

                                                                        
Query: 745  gttcttactagctagttttgggaaagttttggtttggtttgaccagcgacaatactttan 804
            ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 5342 gttctaactagctag-tttgggaaagttttggtttggtttgaccagcgacaatac-ttag 5285

                                                            
Query: 805  aaatggtcagttgtctttggcgaccttcagtttacacaatttaccctt 852
            |||||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct: 5284 aaatggtcag-tgtc-ttggcga-cttcagtttacacaatttaccctt 5240


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,910
Number of Sequences: 1807
Number of extensions: 23910
Number of successful extensions: 532
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)