BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC12ZE12FM1.SCF screened BAC_end (974 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1575 1405 0.0 >3x_Contig1575 Length = 11952 Score = 1405 bits (709), Expect = 0.0 Identities = 758/768 (98%), Gaps = 5/768 (0%) Strand = Plus / Minus Query: 85 ttattttttcgtttctatcaacaattttacatcaaagctttagctgtcctaccgtaaagt 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6002 ttattttttcgtttctatcaacaattttacatcaaagctttagctgtcctaccgtaaagt 5943 Query: 145 ttgaaactggttttgccaacatagaaaacaatccaggccggttctcagtcccacgcattt 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5942 ttgaaactggttttgccaacatagaaaacaatccaggccggttctcagtcccacgcattt 5883 Query: 205 catagtacgcgtcattataggtaaaatccaaaaaaaaaaaaagttgaagatttcagaata 264 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5882 catagtacgcgtcagtataggtaaaatccaaaaaaaaaaaaagttgaagatttcagaata 5823 Query: 265 ttagcatagaggccaaaatccaacaaaaattatactctatactttgcgtaggcatatttt 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5822 ttagcatagaggccaaaatccaacaaaaattatactctatactttgcgtaggcatatttt 5763 Query: 325 gccatactgaaaaagttccattttttttttttttaatgttttaccctaaccaactgattc 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5762 gccatactgaaaaagttccattttttttttttttaatgttttaccctaaccaactgattc 5703 Query: 385 ttttcaaagaaaaaatcatattcaagtcccacagaaaagagggtagggtaaatctgccat 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5702 ttttcaaagaaaaaatcatattcaagtcccacagaaaagagggtagggtaaatctgccat 5643 Query: 445 atccttcaatttagatggaattggcggctaaaagacgaattccatgaaatatagagaaac 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5642 atccttcaatttagatggaattggcggctaaaagacgaattccatgaaatatagagaaac 5583 Query: 505 agcaagaaataatgccatctaagctatattgtaaacctcgtagataagtttgatagaaac 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5582 agcaagaaataatgccatctaagctatattgtaaacctcgtagataagtttgatagaaac 5523 Query: 565 gatcaatcagattggaaaggaggcaaagttagagggtttcttagggaaggcggtctctta 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5522 gatcaatcagattggaaaggaggcaaagttagagggtttcttagggaaggcggtctctta 5463 Query: 625 attcctgtcacgtggcaataaattccctttcgattcttcatacaactgtgagttggtact 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5462 attcctgtcacgtggcaataaattccctttcgattcttcatacaactgtgagttggtact 5403 Query: 685 cttttttttgaagtcctgcttcaaaagatactggtagtttgttgacacatacttatctga 744 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5402 ctcttttctgaagtcctgcttcaaaagatactggtagtttgttgacacatacttatctga 5343 Query: 745 gttcttactagctagttttgggaaagttttggtttggtttgaccagcgacaatactttan 804 ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 5342 gttctaactagctag-tttgggaaagttttggtttggtttgaccagcgacaatac-ttag 5285 Query: 805 aaatggtcagttgtctttggcgaccttcagtttacacaatttaccctt 852 |||||||||| |||| ||||||| |||||||||||||||||||||||| Sbjct: 5284 aaatggtcag-tgtc-ttggcga-cttcagtttacacaatttaccctt 5240 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,910 Number of Sequences: 1807 Number of extensions: 23910 Number of successful extensions: 532 Number of sequences better than 1.0e-20: 1 length of query: 974 length of database: 10,358,551 effective HSP length: 16 effective length of query: 958 effective length of database: 10,329,639 effective search space: 9895794162 effective search space used: 9895794162 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)