BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZE12RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1362 0.0
>3x_Contig1416
Length = 10161
Score = 1362 bits (687), Expect = 0.0
Identities = 758/778 (97%), Gaps = 3/778 (0%)
Strand = Plus / Minus
Query: 47 cttgtcccactacctggtgtattttacaaggtttcatttgagagagattctattatacat 106
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2765 cttgtcccactacctggtgtatcgtacaaggtttcatttgagagagattctattatacat 2706
Query: 107 gtgctatctgagttcaaacgaaataattcattcaagaataatcatctattggacaaaatc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2705 gtgctatctgagttcaaacgaaataattcattcaagaataatcatctattggacaaaatc 2646
Query: 167 aacacggttattgctcagaacgaaatagtagtcgataattcagttgtgaatt-angtaaa 225
||||||| |||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 2645 aacacggctattgctcagaacgaaatagtagtcgataattcagttgtgaattcatgcaaa 2586
Query: 226 cagttccataagaagtacggctctgataatagcaataatgacgcagaagttcagatgtac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2585 cagttccataagaagtacggctctgataatagcaataatgacgcagaagttcagatgtac 2526
Query: 286 atagttcttttaccctttgaagccgtgaataactctgttggagctgcttcaagaataact 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2525 atagttcttttaccctttgaagccgtgaataactctgttggagctgcttcaagaataact 2466
Query: 346 gcaattcaggtggaagatgacaccattacaattacgttcaaatcagtcgcaagagttgaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2465 gcaattcaggtggaagatgacaccattacaattacgttcaaatcagtcgcaagagttgaa 2406
Query: 406 aacaaacaacctctattgaatatgcaacatagtttatggaaatccagcatcctagaaatt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2405 aacaaacaacctctattgaatatgcaacatagtttatggaaatccagcatcctagaaatt 2346
Query: 466 gacgatcgctcagaactacggacctgggatcataaaagcattaacaaaagcattttgagt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2345 gacgatcgctcagaactacggacctgggatcataaaagcattaacaaaagcattttgagt 2286
Query: 526 ttcgtgaagatattttacgacacagacaaaataatcaaagacttcaaatcaaaatactca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2285 ttcgtgaagatattttacgacacagacaaaataatcaaagacttcaaatcaaaatactca 2226
Query: 586 ttagcatccaagagatcaggtgatatagattctagggtcttatatctttctcccttagcg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2225 ttagcatccaagagatcaggtgatatagattctagggtcttatatctttctcccttagcg 2166
Query: 646 aacactcttttcatgcagttaaatgggtctcactttaacaagtctttggaattattgaag 705
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 2165 aacactcttttcatgcagttaaatgggtctcactttaacaagtcttggaaattattgaag 2106
Query: 706 gcttatctagagcaactcactgtgcttgaaatgaattatgacaccctgcttggaataaga 765
||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| ||
Sbjct: 2105 gcttatctagagcaactcactgtgcttgaaaggaattatgaca-cctgctttgaattagt 2047
Query: 766 ttcaatgatggactgggaaaggaatatactacctatgttattggaaccaacgcttaga 823
|||||||||||||| || || || |||||||||||||| ||| ||| |||||||||||
Sbjct: 2046 ttcaatgatggacttggtaatgagtatactacctatgtcatt-gaaacaacgcttaga 1990
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7518
Number of Sequences: 1807
Number of extensions: 7518
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)